Plant FIBer expression Database

Potri.005G236400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G39590 639 / 0 TLD-domain containing nucleolar protein (.1)
AT5G06260 43 / 0.0006 TLD-domain containing nucleolar protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G025032
[exp]
514 / 0 AT5G39590 414 / 4e-143 TLD-domain containing nucleolar protein (.1)
Potri.002G024966
[exp]
319 / 4e-107 AT5G39590 192 / 2e-58 TLD-domain containing nucleolar protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012406
[exp]
680 / 0 AT5G39590 657 / 0.0 TLD-domain containing nucleolar protein (.1)
Lus10024317
[exp]
665 / 0 AT5G39590 643 / 0.0 TLD-domain containing nucleolar protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07534 TLD TLD
Representative CDS sequence
>Potri.005G236400.1 pacid=42803509 polypeptide=Potri.005G236400.1.p locus=Potri.005G236400 ID=Potri.005G236400.1.v4.1 annot-version=v4.1
ATGGGAGCATCGTCTTCTAAGGAGCAGAACGTATCAAGTGAACAGAGGGAGGTGGAAAGTCTAGCAGCTTCCACTGGATCAACCTCCTTGCTTCAAAATG
CTTTCTCTAAGCTTGCCGATCCTCAAACAAATGCAATCCCTCTTCAGTCTCTTCAGCCATGCTTCTCTTTGAATTATAAAAGCACAGAATGCGAAGCATT
GAAAATGCCTGATTCCCTTTTGGGATTATTGGATCATCTGGGTCCATCAATGGTAGACCTGTTTTTCATTACTGATAAAGGAGGGGTTAATTGGATTGAG
TTTGTTAGAGGTTATTTGAAATGCTGTGGGAGGATGCCTGTTTCAGTATTGCTTAATACATTGTTGAGACTATTTTCTGCAACGGGAGTGAAAGCAGGAA
TTCCTTTGAAACTGGAGGTTGAAGCTATTGATGATGGTGAATATAAGATAAGCGGGTCGCTTCTGCCTATTGATGTGCTTATGTTTCTTTGGATGTGTTG
GGCTATGTTGTGGAATTCAAGAACTTGGAACTTTTTAAAAGAGAAAGAGTGTCTGTATCTTCCAGATATTAGTCCTTTGGTGTTATCCGCGGTTGTTTCT
TGTGCTGAAGGTGGTAGTGGATTGGAATTGTGGGATTGTGATGTCTCGGTTTTAGATGTTCAACTTCCTGCTGGAAAGTTTCTTACATGGATGCTGACAA
CAGTGACAAACCTCACAGAGTGTTTTACACAATTTGTCAATGCAAGACTGCAAAACTGCACTAGTTCGGAGCAAGATACACTGGAATCTTCAAGCTCATC
ATTAAGAGAAATCTCTTCAGAAAAGGCATGCAACTCTTGTCTTCTAACCTGTGGAAAAGCATGGGCAATTTCCCTTACAATCAGGAGTGCAATAAGTCAA
GAAATTCTGAACCCATACTTTCCTAGTAACAGTGATGCAACAGATGAGAATCTTATTTATCGGTCATCTCTCCATGGGAAGGGCTTGAACAGATTCTGGT
CTAACATCGAAGGTTATCTTGGTCCAATGCTGATTTTGATTTCTGCTACTTCTGGAGATGCAAGTGAGGATAGCACCAATTGTAGGAAATGGATTGTAGG
TGCACTCACCCACCAGGGTTTCGAAAATAGGGATATGTTCTATGGAACCTCTGGAACCCTATATGCTATAAGTCCAGTCTTCCACATGTACTCACCTTCT
GGGAAGGAGAAAAACTTTGTTTACAGCCACTTGCATCCTACTGGTAGAGTTTATGAGGCACGTCCAAAGCCTGTGGGCATTGCATTTGGAGGAACCATTG
GGAATGAGAGGGTTTATATGGATGGAGACTTTTCCAGAGTTACAGTTCGCCATCATGCAGTTGACAAAACTTACCAGCAAGGTTCACTTTTCCCGAATCA
GGGGTTTCTCCCAGCTGAAGCTTTGATTTTAGAGGTGGAGGTTTGGGGTTTAGGTGGGAGGAAAGCAAGGGAAATTCAATTTTCATATAAGAAGAGAGAG
GATCTTTTCACTGCACAAAGACGCAAGGTTGACATGAAAACTTTCGCAAGCTGGGAGGATTCACCTGAGAAGATGATGACGGATATGATGGCTGACCCCA
ACAGAGTTCGAAGGGAAGACCGCTGA
AA sequence
>Potri.005G236400.1 pacid=42803509 polypeptide=Potri.005G236400.1.p locus=Potri.005G236400 ID=Potri.005G236400.1.v4.1 annot-version=v4.1
MGASSSKEQNVSSEQREVESLAASTGSTSLLQNAFSKLADPQTNAIPLQSLQPCFSLNYKSTECEALKMPDSLLGLLDHLGPSMVDLFFITDKGGVNWIE
FVRGYLKCCGRMPVSVLLNTLLRLFSATGVKAGIPLKLEVEAIDDGEYKISGSLLPIDVLMFLWMCWAMLWNSRTWNFLKEKECLYLPDISPLVLSAVVS
CAEGGSGLELWDCDVSVLDVQLPAGKFLTWMLTTVTNLTECFTQFVNARLQNCTSSEQDTLESSSSSLREISSEKACNSCLLTCGKAWAISLTIRSAISQ
EILNPYFPSNSDATDENLIYRSSLHGKGLNRFWSNIEGYLGPMLILISATSGDASEDSTNCRKWIVGALTHQGFENRDMFYGTSGTLYAISPVFHMYSPS
GKEKNFVYSHLHPTGRVYEARPKPVGIAFGGTIGNERVYMDGDFSRVTVRHHAVDKTYQQGSLFPNQGFLPAEALILEVEVWGLGGRKAREIQFSYKKRE
DLFTAQRRKVDMKTFASWEDSPEKMMTDMMADPNRVRREDR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G39590 TLD-domain containing nucleola... Potri.005G236400
[exp]
0 1
AT4G38130 ATHDA19, ATHD1,... ARABIDOPSIS HISTONE DEACETYLAS... Potri.004G209800
[exp]
5.65 0.7226 RPD3.2
AT4G38380 MATE efflux family protein (.1... Potri.009G143400
[exp]
9.69 0.7277
AT3G10572 APEM9 ABERRANT PEROXISOME MORPHOLOGY... Potri.006G078700
[exp]
10.95 0.7179
AT4G01240 S-adenosyl-L-methionine-depend... Potri.002G165300
[exp]
22.31 0.7251
AT5G16530 PIN5 PIN-FORMED 5, Auxin efflux car... Potri.013G087000
[exp]
29.32 0.7147 PIN9.2
AT1G17720 ATBBETA, ATB BE... Protein phosphatase 2A, regula... Potri.015G079300
[exp]
38.80 0.7222
AT1G60170 EMB1220 embryo defective 1220, pre-mRN... Potri.014G102800
[exp]
43.80 0.6987
AT1G59970 Matrixin family protein (.1) Potri.008G027600
[exp]
47.03 0.7068
AT1G55170 unknown protein Potri.003G037900
[exp]
51.49 0.6824
AT5G27720 LSM4, EMB1644 SM-like protein 4, embryo defe... Potri.014G130700
[exp]
82.37 0.6552 GRP2.2

Potri.005G236400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.