Plant FIBer expression Database

Potri.005G236500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G15320 35 / 0.0001 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G024900
[exp]
44 / 4e-08 AT5G15320 76 / 1e-20 unknown protein
Potri.004G164066
[exp]
36 / 9e-05 AT3G01130 55 / 2e-12 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G236500.2 pacid=42804541 polypeptide=Potri.005G236500.2.p locus=Potri.005G236500 ID=Potri.005G236500.2.v4.1 annot-version=v4.1
ATGACGCTACCTCCAGGTCCTTACTCCGGTGCCAGCGCTCTCGCTCTGGTGGCGCGTGCATCAGCATTCAGTTTTGGCTTGGTTTATGGAAGTGTGAAGC
TCAAGATTCTCAAGATGAAAGCAAATTCACATAAGAAGGCGGAAGCTAAGGCACATCACTGA
AA sequence
>Potri.005G236500.2 pacid=42804541 polypeptide=Potri.005G236500.2.p locus=Potri.005G236500 ID=Potri.005G236500.2.v4.1 annot-version=v4.1
MTLPPGPYSGASALALVARASAFSFGLVYGSVKLKILKMKANSHKKAEAKAHH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G15320 unknown protein Potri.005G236500
[exp]
0 1
AT1G72020 unknown protein Potri.013G110600
[exp]
3.00 0.8988
AT5G05370 Cytochrome b-c1 complex, subun... Potri.019G132000
[exp]
5.65 0.9009
AT3G48680 AtCAL2, GAMMACA... gamma carbonic anhydrase-like ... Potri.012G100400
[exp]
6.85 0.9032
AT5G51960 unknown protein Potri.008G044200
[exp]
12.04 0.8900
AT2G47690 NADH-ubiquinone oxidoreductase... Potri.014G129600
[exp]
15.19 0.8576
AT2G25310 Protein of unknown function (D... Potri.006G257100
[exp]
15.36 0.8950
AT5G49510 PFD3, PDF3 prefoldin 3 (.1.2) Potri.010G147600
[exp]
23.91 0.8615
AT4G16450 unknown protein Potri.006G016300
[exp]
24.24 0.8897
AT3G55440 CYTOTPI, ATCTIM... CYTOSOLIC ISOFORM TRIOSE PHOSP... Potri.010G203500
[exp]
24.49 0.8540 Pt-CTIMC.2
AT1G19580 GAMMACA1 ,GAMMA... gamma carbonic anhydrase 1 (.1... Potri.005G229000
[exp]
26.83 0.8765 APFI.2

Potri.005G236500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.