Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RAD3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27230 635 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G40830 623 / 0 ATRAD3, ATATR S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G05390 254 / 6e-80 unknown protein AT4G01240 250 / 2e-76 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29790 222 / 1e-68 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G51070 51 / 2e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G34300 50 / 2e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G06050 50 / 3e-06 Putative methyltransferase family protein (.1) AT1G29470 49 / 6e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G23300 48 / 1e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G024800 [exp] 823 / 0 AT3G27230 600 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.004G231100 [exp] 282 / 6e-91 AT3G05390 287 / 2e-92 unknown protein Potri.017G135100 [exp] 280 / 7e-91 AT3G05390 278 / 3e-89 unknown protein Potri.004G083800 [exp] 280 / 2e-90 AT3G05390 278 / 3e-89 unknown protein Potri.013G019400 [exp] 260 / 3e-82 AT3G05390 753 / 0.0 unknown protein Potri.002G165300 [exp] 253 / 1e-79 AT4G01240 662 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.004G116900 [exp] 251 / 1e-78 AT4G01240 388 / 7e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G352700 [exp] 234 / 3e-73 AT1G29790 437 / 2e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.011G079000 [exp] 223 / 5e-69 AT1G29790 439 / 2e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034506 [exp] 665 / 0 AT3G27230 599 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024318 [exp] 645 / 0 AT3G27230 581 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033164 [exp] 503 / 2e-175 AT3G27230 451 / 3e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10012420 [exp] 356 / 1e-122 AT3G27230 320 / 7e-109 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024319 [exp] 296 / 1e-99 AT3G27230 268 / 2e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10020803 [exp] 280 / 1e-90 AT5G40830 282 / 1e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10007385 [exp] 275 / 6e-89 AT5G40830 277 / 1e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010138 [exp] 259 / 8e-82 AT4G01240 620 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10029907 [exp] 250 / 2e-78 AT3G05390 697 / 0.0 unknown protein Lus10004494 [exp] 246 / 5e-77 AT3G05390 699 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.005G236600.1 pacid=42804638 polypeptide=Potri.005G236600.1.p locus=Potri.005G236600 ID=Potri.005G236600.1.v4.1 annot-version=v4.1 ATGGGATCAGTGTCCCTGAAAATTGGAGATGGAACAGCCAGATTCAAGAGAGCAAGTTTCTGTTCATCAGCAGTGAACATTCTCATGCTCTTCTCTGTTA TAACCACAAATCTTTTTGCATTATATGCCTTCACATCTTCTCCAAAAGATCATCAAGCTCACCTCATTCACAATCCCCATAAAAACATTTCTTTGATCTC CGAGCATGTCTCTTTAATACTAAGAGAGATCGCTTCTTCTCAGAAAAAGCTTGCCAGGATGGAAAAGGAGCTTTTGGGCTATGAAACTATGGATATTTCA AGGCCCAATATTGCAAGTGAGCTCAAATTGTTCTTGCAACACCATCAACTCCCTCTTGGTAAAGATTCAAGAACTGGGATCACTGAGATGGTGGCTTCTG TGGGTCATTCTTGTGAGAAATCTCCAGACTTGTTGTCCCAGTATATGGTTTATAAGATTTCCGGGCCTTGTCCTGATGATTGGAGCCTTGGCCAGAAGCT GATTTTGCGTGGATGTGAGCCTTTGCCCAGAAGGAGATGCTTTGCCAAGTCTGTTCCTAAGGTGGGTCTTTATCGTTTTCCTGTTTCACTTTGGAAACCT GTTAGTGAAAAGATTTTAACTTGGAGTGGTCTTGGTTGCAAGAATTTTGAGTGCTTGAATAAAAAGAAATTGAGTAGGGATTGTGATGGTTGCTTTAATA TTACTAGTGGCTATGAGATTCAAAAGTTTGTTAAAGCTAGAGGCAGGAATGATTTTCTTATTGATGATGTGTTAGCTCTAGCAAGTGGAGGAATTAGAAT TGGATTTGATATTAGTGGTGGGTCTGGAACTTTTGCTGCTAGAATGGCAGAGAGAAATGTGACTGTGATTACTAATACTTTGAATGTGGATGCTCCATTT AGTGAATTTATTGCAGCAAGAGGGCTTTTCCCTTTGTATTTGAGTTTAGATCACAGGTTCCCTTTCTATGATAATGTGTTTGATTTAATTCATGCTTCTA GTGGATTGGATGGAGGGGACAAACCTGAAGAATTAGAGTTCTTAATGTTTGATATCGATCGAATTCTGAGGGCTGGTGGATTGTTCTGGTTAGATAACTT CTATTGTGCAAATGATGTGAAGAAGACAGCTTTGACTCGATTGATTGAGCGGTTTGGGTATAAGAAGCTGAAATGGGTTGTGGGTGAGAAGGTAGACACA GCTGGGTCAGGGAAATCGGAAGTTTATTTGTCTGCCGTTCTTCAAAAGCCAGCAAGAGTGTGA
AA sequence Show only first row Show all	>Potri.005G236600.1 pacid=42804638 polypeptide=Potri.005G236600.1.p locus=Potri.005G236600 ID=Potri.005G236600.1.v4.1 annot-version=v4.1 MGSVSLKIGDGTARFKRASFCSSAVNILMLFSVITTNLFALYAFTSSPKDHQAHLIHNPHKNISLISEHVSLILREIASSQKKLARMEKELLGYETMDIS RPNIASELKLFLQHHQLPLGKDSRTGITEMVASVGHSCEKSPDLLSQYMVYKISGPCPDDWSLGQKLILRGCEPLPRRRCFAKSVPKVGLYRFPVSLWKP VSEKILTWSGLGCKNFECLNKKKLSRDCDGCFNITSGYEIQKFVKARGRNDFLIDDVLALASGGIRIGFDISGGSGTFAARMAERNVTVITNTLNVDAPF SEFIAARGLFPLYLSLDHRFPFYDNVFDLIHASSGLDGGDKPEELEFLMFDIDRILRAGGLFWLDNFYCANDVKKTALTRLIERFGYKKLKWVVGEKVDT AGSGKSEVYLSAVLQKPARV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27230			S-adenosyl-L-methionine-depend...		Potri.005G236600 [exp]	0	1	Pt-RAD3.1
AT3G27230			S-adenosyl-L-methionine-depend...		Potri.002G024800 [exp]	1.41	0.8385	RAD3.2
AT2G31680		AtRABA5d	RAB GTPase homolog A5D (.1)		Potri.002G231800 [exp]	1.41	0.8651
AT3G51990			Protein kinase superfamily pro...		Potri.009G055200 [exp]	5.00	0.7944
AT5G23540			Mov34/MPN/PAD-1 family protein...		Potri.014G032900 [exp]	16.00	0.8312
AT5G01090			Concanavalin A-like lectin fam...		Potri.010G194700 [exp]	20.49	0.7911
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Potri.006G140400 [exp]	36.74	0.8103
AT3G12110		ACT11	actin-11 (.1)		Potri.016G045500 [exp]	39.68	0.8150	ACT7,Pt-ACT2.3
AT1G01170			Protein of unknown function (D...		Potri.016G055200 [exp]	39.79	0.8100
AT1G18210			Calcium-binding EF-hand family...		Potri.015G039500 [exp]	40.39	0.7779	Pt-CBL1.2
AT5G26960			Galactose oxidase/kelch repeat...		Potri.001G271900 [exp]	44.11	0.7166

Compare expression of checked genes

Potri.005G236600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.