Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19850 1060 / 0 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT1G30330 511 / 1e-166 ARF ARF6 auxin response factor 6 (.1.2) AT1G19220 514 / 2e-166 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT5G37020 499 / 5e-164 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT5G20730 502 / 1e-160 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) AT5G62000 393 / 1e-122 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 368 / 3e-115 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT2G46530 354 / 8e-111 ARF ARF11 auxin response factor 11 (.1.2.3) AT4G23980 354 / 2e-110 ARF ARF9 auxin response factor 9 (.1.2) AT3G61830 349 / 9e-109 ARF ARF18 auxin response factor 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G024700 [exp] 1698 / 0 AT1G19850 1032 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.005G207700 [exp] 524 / 8e-172 AT5G37020 694 / 0.0 auxin response factor 8 (.1.2) Potri.002G055000 [exp] 521 / 1e-170 AT1G30330 775 / 0.0 auxin response factor 6 (.1.2) Potri.004G078200 [exp] 516 / 1e-169 AT5G37020 1057 / 0.0 auxin response factor 8 (.1.2) Potri.006G138500 [exp] 522 / 3e-168 AT1G19220 734 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.017G141000 [exp] 511 / 3e-168 AT5G37020 1048 / 0.0 auxin response factor 8 (.1.2) Potri.006G077800 [exp] 518 / 2e-167 AT1G19220 664 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.018G145800 [exp] 517 / 5e-167 AT1G19220 665 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.011G091900 [exp] 510 / 1e-166 AT1G30330 830 / 0.0 auxin response factor 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012421 [exp] 1226 / 0 AT1G19850 1026 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10024320 [exp] 796 / 0 AT1G19850 724 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10027600 [exp] 523 / 1e-169 AT1G19220 670 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10033598 [exp] 512 / 7e-169 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10033597 [exp] 511 / 3e-167 AT1G19220 842 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10031354 [exp] 508 / 3e-167 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10010969 [exp] 508 / 6e-167 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10017641 [exp] 511 / 1e-165 AT1G30330 810 / 0.0 auxin response factor 6 (.1.2) Lus10007386 [exp] 504 / 2e-165 AT5G37020 1021 / 0.0 auxin response factor 8 (.1.2) Lus10020804 [exp] 486 / 5e-156 AT5G37020 913 / 0.0 auxin response factor 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02309 [poplar] [flax] AUX_IAA AUX/IAA family CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.005G236700.1 pacid=42803457 polypeptide=Potri.005G236700.1.p locus=Potri.005G236700 ID=Potri.005G236700.1.v4.1 annot-version=v4.1 ATGGGGTCTGTGGAAGAGAAAATCAAGACAGGAGGGCTTGCTAATGGAGCTCAAACAAATCTTCTCGAGGAAATGAAGTTGTTGAAAGAATTTCAAGATC AGTCTGGAATACGGAAGGCAATCAACTCGGAGCTGTGGTACGCTTGTGCAGGCCCACTAGTTTCCTTGCCTCAGGTTGGAAGTCTGGTGTATTATTTTCC TCAAGGACACAGTGAGCAGGTGGCAGTTTCCACGAGAAGATCAGCTACTTCACAGATCCCCAACTACCCAAATCTGCCTTCTCAGTTATTGTGCCAAGTT CACAATGTCACCCTACATGCAGACAAAGATACAGATGAAATCTATGCTCAAATGAGTCTTCAACCAGTGAACACTGAAAAAGATGTCTTCCCTATACCAG ATTTTGGGCTAAGGCCCAGCAAGCATCCAAGTGAATTTTTCTGCAAAACTTTGACTGCTAGCGATACAAGTACACACGGTGGCTTCTCAGTGCCACGCAG GGCAGCAGAAAAGCTCTTCCCTCCACTGGATTACACAATGCAACCGCCAACTCAGGAGCTTGTTGTAAGGGACTTGCATGATAATACCTGGACTTTTCGC CATATATACCGCGGGCAGCCAAAACGACACCTTCTTACAACTGGGTGGAGTTTATTTGTGGGTTCAAAAAGGCTTAAAGCAGGTGATTCTGTTTTGTTCA TCAGGGATGAAAAGTCACAGTTAATGGTGGGTGTGAGGCGTGCAAACCGTCAACAAACAACATTACCTTCATCAGTTCTATCTGCTGATAGCATGCACAT TGGTGTCCTTGCTGCTGCAGCTCATGCTACTGCCAATCGAAGCCCATTCACCATTTTTTACAATCCAAGGGCATGCCCTTCAGACTTTGTCATTCCTTTG ATTAAATTCCGGAAAGCTGTATTTGGAACTCAAGTCTCAGTCGGTATGAGGTTTGGAATGATGTTTGAGACAGAAGAGTCAGGAAAACGCAGATATATGG GCACAATAGTTGGTATCAGTGACTTGGATCCACTGAGGTGGCCTGGTTCTAAGTGGCGGAATCTTCAGGTGGAGTGGGATGAGCCAGGGTGTTCTGATAA GCAGAACAGGGTTAGTTCATGGGAAATTGAGACTCCCGAAAGTCTCTTTATTTTTCCTTCTCTGACTTCAGGTCTCAAACGACCCTTGCAGTCTGGATTT TTAGGAGATTCTGAGTGGGGGAGTTTGGTAAAAAAGCCCCTTTCATGGCTTCCTGGCAGTGGAAATGCAAATCTCCCATATGCTTCAATGTCAAACATAT GTTCTGAACAACTGATTAACATGCTAATGAAACCTCATCCTATTAACTATCCTGGAATCTGTGGAGCTGCACTACCAGAAGTTTCTGCCGCGAAGGTGGC TTCATTAGATGTTAAGAACATGCAGGCAACAATTAATCAGATGCCTCAGCTAAACCAGTCAGGAGTTACGTCTGTAGAAAACCAGAATTATTCACAGATC TGTCTAGACCAATCTGATGCCATAATCTCATCTTCATTGAAAATAAATGTAGCTGGGAAGTCATTTTCTTCAAGCGAAGTTGAAAATCAAGCATCAGTTG GAGTTGGTGAAAGAAAATTAAAGGCAGAAACTGAGCATTTGCCAGATCAGTTAAGCCAGCTAACCTCAACAGGAGAATGCATTGTGCAGAAACCATCATC GTGTCCTATGACCCAGCAGAATGCCACAAATCATCTAGCGTTCCAAAACCAGAATCAGGGCCACTCACAATTACAAACCAACCTCTGGCCTGCACAGGCA TTTCCAGAATCATCGCTACTTAATTCCCAACAGATCCTTTCACCTCTTGCTGATGCTACTGCACCTAACTGCTCACTACCGTTTCTAGATGCAGATGAAT GGATATCACATCCCATGTCTCTTGCTGGGATGTATAGATCGGGGCCACTGTCTATGTTTGGATCACAGGACACATCAGTTGTGTTCCCGGAAGCAATTAA TCCCTCTTTACCTTTTATGAATCAAGATGTGTGGGATCATCAGATGAGCAATTCAAGATTTCTATCCCAAGCAAACCAATTGATTTCTTCGACTCAGCAA GAGCCTTGTACCTTAAACTCAGGTGCAGTGAAGGATTTATCTGATGAGAGCAATGATCAAAGTGGGATTTATGGTTCTCTCAACTTTGACGCCAGCAATG GGGGTGGTTCTGTGGTCGATCCTTCTGTCTCAAGTGCTATACTAGATGAGTTCTGCACATTAAAGGATGCTGATTTGCAGAATGCTTCGGATTGTCTAGT TGGCAACCTCAGCTCAAGCCAGGATGTTCAGTCTCAGATTACCTCAGCAAGCCTAGCAGATTCCCAAGCTTTCTCACGGCAAGACTTTCCTGACAACTCA GGTGGTACATCTTCCAGCAACGTTGATTTTGATAATAGCAATATGCTCCAGAATAGCTCATGGCAGCAAGTTGCCCCACGTGTGCGCACATATACCAAGG TTCAGAAGACAGGGTCTGTTGGCAGGTCAATTGATGTCTCGAGTTTTAAAAATTATGAAGAACTATGCTCCGCTATTGAATGCATGTTTGGACTTGACGG GCTTCTAAATAATCCTAAACGTTCTGGGTGGAAATTAGTATACGTGGACTACGAGAATGACGTTCTACTCATTGGTGATGATCCTTGGGAGGAATTTGTC GGCTGTGTCCGTTGCATAAGGATTCTGTCACCTTCAGAAGTTCAGCAGATGAGTGAAGAGGGAATGAAGCTTCTTAACAGCGCTAACATCCAAGGGACCA ATGCACCCATCACCGAGGGTAGCCATGCTCGATAA
AA sequence Show only first row Show all	>Potri.005G236700.1 pacid=42803457 polypeptide=Potri.005G236700.1.p locus=Potri.005G236700 ID=Potri.005G236700.1.v4.1 annot-version=v4.1 MGSVEEKIKTGGLANGAQTNLLEEMKLLKEFQDQSGIRKAINSELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTRRSATSQIPNYPNLPSQLLCQV HNVTLHADKDTDEIYAQMSLQPVNTEKDVFPIPDFGLRPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFR HIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLMVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHATANRSPFTIFYNPRACPSDFVIPL IKFRKAVFGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCSDKQNRVSSWEIETPESLFIFPSLTSGLKRPLQSGF LGDSEWGSLVKKPLSWLPGSGNANLPYASMSNICSEQLINMLMKPHPINYPGICGAALPEVSAAKVASLDVKNMQATINQMPQLNQSGVTSVENQNYSQI CLDQSDAIISSSLKINVAGKSFSSSEVENQASVGVGERKLKAETEHLPDQLSQLTSTGECIVQKPSSCPMTQQNATNHLAFQNQNQGHSQLQTNLWPAQA FPESSLLNSQQILSPLADATAPNCSLPFLDADEWISHPMSLAGMYRSGPLSMFGSQDTSVVFPEAINPSLPFMNQDVWDHQMSNSRFLSQANQLISSTQQ EPCTLNSGAVKDLSDESNDQSGIYGSLNFDASNGGGSVVDPSVSSAILDEFCTLKDADLQNASDCLVGNLSSSQDVQSQITSASLADSQAFSRQDFPDNS GGTSSSNVDFDNSNMLQNSSWQQVAPRVRTYTKVQKTGSVGRSIDVSSFKNYEELCSAIECMFGLDGLLNNPKRSGWKLVYVDYENDVLLIGDDPWEEFV GCVRCIRILSPSEVQQMSEEGMKLLNSANIQGTNAPITEGSHAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Potri.005G236700 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.008G187700 [exp]	2.64	0.8951
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Potri.015G109800 [exp]	2.82	0.8640	RHD2.2
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Potri.006G134450 [exp]	3.87	0.8598
AT4G19460			UDP-Glycosyltransferase superf...		Potri.003G105500 [exp]	5.29	0.8541
AT1G70630			Nucleotide-diphospho-sugar tra...		Potri.008G186800 [exp]	6.92	0.8513
AT3G57540			Remorin family protein (.1)		Potri.006G053200 [exp]	7.48	0.8496
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014360 [exp]	8.54	0.7722
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Potri.012G108500 [exp]	8.66	0.8520
AT2G03810			18S pre-ribosomal assembly pro...		Potri.008G111800 [exp]	10.24	0.8313
AT5G47610			RING/U-box superfamily protein...		Potri.001G453800 [exp]	10.81	0.7970

Compare expression of checked genes

Potri.005G236700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.