Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19920 735 / 0 ASA1, APS2 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) AT3G22890 643 / 0 APS1 ATP sulfurylase 1 (.1) AT4G14680 634 / 0 APS3 Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) AT5G43780 633 / 0 APS4 Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G024200 [exp] 874 / 0 AT1G19920 758 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) Potri.008G159000 [exp] 644 / 0 AT3G22890 767 / 0.0 ATP sulfurylase 1 (.1) Potri.010G081200 [exp] 639 / 0 AT3G22890 758 / 0.0 ATP sulfurylase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034513 [exp] 745 / 0 AT1G19920 744 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) Lus10033158 [exp] 740 / 0 AT1G19920 736 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) Lus10006629 [exp] 639 / 0 AT3G22890 769 / 0.0 ATP sulfurylase 1 (.1) Lus10039389 [exp] 524 / 0 AT4G14680 655 / 0.0 Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF01747 [poplar] [flax] ATP-sulfurylase ATP-sulfurylase CL0178 [poplar] [flax] PUA PF14306 [poplar] [flax] PUA_2 PUA-like domain
Representative CDS sequence Show only first row Show all	>Potri.005G237300.2 pacid=42802557 polypeptide=Potri.005G237300.2.p locus=Potri.005G237300 ID=Potri.005G237300.2.v4.1 annot-version=v4.1 ATGTCTCTAACAATTAAACTAACCATAACTCCTCACATAATTAACCTTAATCTCCACCCAAAACACCGCACAAAAATCCCAGCTTACAGCCTCGGAGTCC GACCAAAACCAATCTACCATTCAAACGCACTAATCCCCATTCTATATAACAACAAACAACCCAGAATGTCTCAAGCTTCTGTTTCCGGTTCAGTTATCAA GAGTTCCTTGATCGAGCCAGATGGTGGAGTGGTGGTGGATGTTATAGTGCCAGAGTGCGAGAGGGGGTCAAAGACTTTGGAAGCAGAGTCATTGCCTAAA GTGAGGCTGGCAAGGATTGATGTAGAGTGGGTCCATGTGATAAGTGAAGGATGGGCGAGTCCATTGAAAGGGTTTATGAGAGAAAATGAGTATTTGCAGA GTTTGCATTTCAATTCTTTAAGAATGGGAAATGAGACAGTGGTTAATATGTCGCTTCCTATTGTTTTGGCAATTGATGATGAGACTAAAGAGAATATTGG GTCTGCAAAGGATGTTGGGCTGGTTGGTCCTGATGGTGATTTGCTTGCTATCCTTCGAAGTACTGAGATATACAAGCATAACAAAGAAGAAAGAATAGCT AGAACATGGGGGACAACTGCACCTGGACTGCCATATGTTGAGGAATTCATTACTCCAGCTGGTAACTGGCTCATAGGTGGAGATCTAGAAGTTCTAAAGC CCATCAAGTACAATGATGGGCTTGATCACTATAGGCTCTCTCCCCAACAACTCAGGAAGGAATTTGATAGACGTCAAGCTGATGCAGTTTTTGCATTTCA GTTAAGGAATCCTGTTCACAACGGGCATGCCTTATTGATGAATGATACACGTAGGCGGCTTTTGGAAATGGGTTATAAGAATCCTATTCTACTGCTTCAT CCCTTAGGAGGTTTCACTAAGGCTGATGATGTTCCTTTGGCTGTTCGGATGGAACAACACAGCAAGGTTCTAGAAGATGGAGTTCTTGACCCTGAAACTA CCATAGTTGCTATATTCCCATCACCTATGCATTATGCTGGTCCTACTGAAGTGCAATGGCATGCCAAGGCTCGAATAAATGCAGGTGCTAACTTTTACAT TGTAGGTCGCGATCCTGCTGGAATGGGTCACCCAACAGAGAAGAGAGATTTATATGATCCTGATCATGGAAAGAAGGTTCTAAGCATGGCTCCAGGCCTG GAAAAGCTGAATATTTTGCCATTTAGGGTGGCAGCATATGATACTGTGGCAAAGAAGATGGCATTTTTTGATCCATCTCGTTCCAAAGATTTCCTCTTCA TCTCTGGAACCAAGATGAGGACTTACGCAAGAACTGGTGAGAACCCTCCTGATGGTTTTATGTGCCCTGGTGGTTGGGAAGTCCTTGTCAAATATTATGA GAGGTTGCAGGCAGAAGAGGCAACACCAGCTGCCGTATCTGCTTAA
AA sequence Show only first row Show all	>Potri.005G237300.2 pacid=42802557 polypeptide=Potri.005G237300.2.p locus=Potri.005G237300 ID=Potri.005G237300.2.v4.1 annot-version=v4.1 MSLTIKLTITPHIINLNLHPKHRTKIPAYSLGVRPKPIYHSNALIPILYNNKQPRMSQASVSGSVIKSSLIEPDGGVVVDVIVPECERGSKTLEAESLPK VRLARIDVEWVHVISEGWASPLKGFMRENEYLQSLHFNSLRMGNETVVNMSLPIVLAIDDETKENIGSAKDVGLVGPDGDLLAILRSTEIYKHNKEERIA RTWGTTAPGLPYVEEFITPAGNWLIGGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDRRQADAVFAFQLRNPVHNGHALLMNDTRRRLLEMGYKNPILLLH PLGGFTKADDVPLAVRMEQHSKVLEDGVLDPETTIVAIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAPGL EKLNILPFRVAAYDTVAKKMAFFDPSRSKDFLFISGTKMRTYARTGENPPDGFMCPGGWEVLVKYYERLQAEEATPAAVSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Potri.005G237300 [exp]	0	1
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.011G021332 [exp]	2.44	0.9625
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.019G014306 [exp]	2.82	0.9651
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Potri.009G053800 [exp]	4.00	0.9505
AT5G24850		CRY3	cryptochrome 3 (.1)		Potri.006G277500 [exp]	4.24	0.9520
AT5G49730		ATFRO6, FRO6	ferric reduction oxidase 6 (.1...		Potri.001G079000 [exp]	5.29	0.9578
AT2G21320	CO		B-box zinc finger family prote...		Potri.005G117100 [exp]	7.00	0.9518
AT5G25840			Protein of unknown function (D...		Potri.003G050200 [exp]	8.77	0.9414
AT1G75100		JAC1	J-domain protein required for ...		Potri.002G134300 [exp]	8.94	0.9417
AT3G52740			unknown protein		Potri.004G202900 [exp]	9.21	0.9538
AT5G46240		KAT1	potassium channel in Arabidops...		Potri.004G132200 [exp]	13.11	0.9076	Pt-KAT1.1

Compare expression of checked genes

Potri.005G237300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.