Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-XRN2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75660 1248 / 0 AtXRN3, XRN3 5'-3' exoribonuclease 3 (.1) AT5G42540 1016 / 0 AtXRN2, XRN2 exoribonuclease 2 (.1.2) AT1G54490 543 / 1e-176 ATXRN4, XRN4, EIN5, AIN1 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G024100 [exp] 1596 / 0 AT1G75660 1137 / 0.0 5'-3' exoribonuclease 3 (.1) Potri.005G048900 [exp] 547 / 2e-178 AT1G54490 1231 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G035600 [exp] 530 / 1e-171 AT1G54490 1175 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G070200 [exp] 461 / 1e-142 AT1G54490 779 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012434 [exp] 1417 / 0 AT1G75660 1291 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10024327 [exp] 1266 / 0 AT1G75660 1162 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10034514 [exp] 1085 / 0 AT1G75660 968 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10020397 [exp] 749 / 0 AT1G75660 782 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10004119 [exp] 548 / 1e-180 AT1G54490 1140 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10015946 [exp] 524 / 2e-169 AT1G54490 1033 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10000941 [exp] 508 / 1e-164 AT1G54490 1092 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10013326 [exp] 409 / 3e-126 AT1G75660 636 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10013328 [exp] 330 / 7e-99 AT1G75660 516 / 2e-171 5'-3' exoribonuclease 3 (.1) Lus10019004 [exp] 288 / 3e-86 AT1G54490 436 / 1e-143 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [poplar] [flax] PIN PF03159 [poplar] [flax] XRN_N XRN 5'-3' exonuclease N-terminus
Representative CDS sequence Show only first row Show all	>Potri.005G237500.2 pacid=42802815 polypeptide=Potri.005G237500.2.p locus=Potri.005G237500 ID=Potri.005G237500.2.v4.1 annot-version=v4.1 ATGGGAGTGCCGGCTTTTTATCGGTGGTTAGCGGAGAAGTATCCTCTAGTGGTGGTTGATGTGATCGAAGAAGAACCGGTAGTTATCGAAGGCGTTAAAA TTCCTGTGGATACAAGTAAACCTAACCCTAACAACATCGAATATGATAATTTATATCTCGATATGAACGGGATTATTCACCCCTGCTTTCATCCCGAAGA CAGACCTTCACCGACTTCATTCGGTGAGGTGTTCCAGTGTATGTTTGATTATATTGACAGGCTTTTCGTGATGGTGAGGCCTCGAAAATTGCTATACATG GCAATCGATGGAGTTGCACCACGGGCGAAAATGAATCAGCAACGGTCTAGGCGATTTAGAGCAGCTAAAGATGCATCTGATGCGGCCGCTGAAGAAGAAA GGCTAAGAGAGGAGTTTGAGAGGGAGGGCAGGAAGCTTCCCCCTAAGGAGACATCTCAAACTTTTGATTCCAATGTTATCACTCCTGGAACTGAATTCAT GGCTGTTTTGTCAATTGCATTGCAGTACTATATTCATCTTAGACTAAACTATGATCCTGGATGGAAGAAAATCAAGGTTGTTCTTTCTGATGCAAATGTT CCTGGTGAAGGGGAACACAAAGTCATGTCCTATATCCGTCTTCAAAGAAACCTTCCTGGTTATGATCCAAATACACGCCATTGTCTGTATGGTTTGGATG CTGATTTAATTATGTTGGCTTTGGCTACTCATGAGGTTCATTTTTCAATTCTTCGAGAGATTGTTTTCACTCCTGGACAACAAGACAAATGCTTCATATG TGGTCAGGCAGGTCATTTAGCAGCTGCTTGTGAAGGAAAAGCGAAGAGGAAGGCAGGAGAATTTGATGAGAAAGGCAATGATGTTGCTGTGCCCAAAAAA CCATACCAGTTTCTCAACATTTGGACTCTTAGAGAGTATTTGGAGTATGAATTCAGAATTCCCAATCCTCCGTTTGAGATTGATTTGGAACGTACTGTGG ATGATTTTATATTCATATGTTTCTTTGTTGGCAATGATTTCCTGCCACACATGCCCACATTGGAGATCCGCGAGGGTGCAATCAACTTGCTGATGGCTGT TTATAAGAAGGAATTTAGGGTGCTTGGTGGGTATTTGACTGATGGCAGCAAGCCAAATTTAAGTAGAGTGGAGCATTTTATTCAAGCTGTGGGTGCATAT GAAGATAAAATATTCCAGAAAAGAGCACGATTGCACCAGCGCCAGGCAGAAAGAATTAAGCGTGAAAAGACACAGGCAAGAAGAGGTGATGATGTGCAGC CTCAACATCAACCTGAATCTTTGGTTGCAGTCACACAATTTCGTGGTTCTCGTCTTGCTTCAGCTCCTACACCTTCACCATATCAGGATGATGGGACACA TTCTCAGACATCTGATGGTAAAGGATCTTCTGTTCAGAGCCGTAAAGTTGCACGTTTGTCTTCAACAGCCAATATTGGTGCTGCCATTGTTGAGGCAGAG AATTGTCTGGAAATAGAAGCACATGAAAACAAAGAAGAATTGAAAACTAAGCTTAAGGAGTCGCTTCGCGAGAAATCTGATGTTTTTAACTCAAAGAATC ACGAAGAAGACAAGGTCAAATTGGGAGAACCAGGGTGGAAAGAAAGATATTATGAAGAGAAGTTTTCGGCAAAATCTCTTGACGAAATGGAAGCTGTACG AAGAGATGTTGTTTTGAGATATACGGAAGGGCTGTGTTGGGTCATGCATTATTATTATGAAGGCGTTTGTTCTTGGCAGTGGTTTTATCCCTATCACTAT GCGCCCTTTGCTTCAGATCTCACAGATCTTGGTCAACTGAACATCAGTTTTGAACTTGGTTCTCCATTCAAACCATTCAACCAGCTTTTGGGAGTTTTCC CTGCAGCAAGTTCCCATGCTCTCCCTGTGCATTATAGGAAATTGATGACGGATCCAAATTCACCTATTTTTGATTTTTACCCTACTGATTTTGAAGTGGA CATGAATGGGAAACGATTTGCATGGCAGGGTATTGCAAAGCTTCCCTTCATTGATGAAGCTCGTCTTCTTGCGGAGGTCCAAAAGATTGAGCACACATTA ACAGAGGAAGAAGCAAGGAGAAACAGTATGATGTTTGACATGCTTTTTGTGTCATCATCTCACCCTCTCTCTGAGAGCATATATTTGCTCGATAATCATT GCAAACAATTAACAGACAAGGAACGAGTTGAGGTCAAGGAGCGTATCAATCCTGAGTTGAGGCCTACATGCAGTGATGGGATGAATGGCTATTTATCTCC CTGTGCTGGAGATACTCATCCTCCTATATTCAGGTCTCCAGTTGTAGGCATGGAAGACATTTTGGCCAATGAAGTCATATGTGTTATATACAGACTTCCT GATCCACACAAACACATCACTTATCCACCTGTTGGTGTTATATTCCCCAAAAAGATTGTGGATCAGGGCGATCTGAAACCTGACCCAGTTTTATGGCACG AGGAATCTGGGAGGAGGCCTTGGGAAAATGACAGGCGAAATCCCCATGGAAATCCCCATGGAACCATCGCTGGCCGTCATCTTGGGGAGGCATCGCATCG ACTTGTTGCCAACAGTCTACACCTGAAAGGGGATCGCAATGGGTATAGCAATCATATGCATGGCCCACCACAACCTTACATTGCAGCTCCCCGTGGCCCA CCACTCTCTTCCTATTCAAATGGGTTGCACAATCAGGGACCCCATGGAACTTTGCGTCCTAGAGGGGATTATTCTCATGCAGGTTATCCCCGATCTACAA GTCCTCGTATACCACCTCACCATGACCGTGGATACGTTGAACCCTATGCTTCGGCAGGACCCAACCCCTCGTATAGTGGTAGGCTACCTCAGTATGAAAG TGAGAACCGATCAGGTGGGCAACATCCAAGGCATGAATTTCATCATAATGGTGGACCAAGGTACCCGAATGGGCCTGGGGCACACATATCAACCGGGCCC ACTACATATGCTTATCAAGGTGGTTATGATGCCAGTCCCCAGCCACCTGGAGCTGGTAGTCACCAGCAATGGGGTGGTAGGTTCCCCCCACCAGCCAACC ATAACAATCCCAGAGGTTTTGGTCACCATCAACAAAGTGGCAACAGATTTTCATCGTTGGATTCTAGAGGAAATAAAATGCCACCACAACATGGCGGAGC AAATAGGAGACAACCACCACCTAGTGGAACATACAGGGGGGCACAGCAATCACCTCCTGGCGGAGCCAGTCGGAGGCCCCATCCACCAGCTGGATATGGT CACCAATAA
AA sequence Show only first row Show all	>Potri.005G237500.2 pacid=42802815 polypeptide=Potri.005G237500.2.p locus=Potri.005G237500 ID=Potri.005G237500.2.v4.1 annot-version=v4.1 MGVPAFYRWLAEKYPLVVVDVIEEEPVVIEGVKIPVDTSKPNPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTSFGEVFQCMFDYIDRLFVMVRPRKLLYM AIDGVAPRAKMNQQRSRRFRAAKDASDAAAEEERLREEFEREGRKLPPKETSQTFDSNVITPGTEFMAVLSIALQYYIHLRLNYDPGWKKIKVVLSDANV PGEGEHKVMSYIRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREIVFTPGQQDKCFICGQAGHLAAACEGKAKRKAGEFDEKGNDVAVPKK PYQFLNIWTLREYLEYEFRIPNPPFEIDLERTVDDFIFICFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRVLGGYLTDGSKPNLSRVEHFIQAVGAY EDKIFQKRARLHQRQAERIKREKTQARRGDDVQPQHQPESLVAVTQFRGSRLASAPTPSPYQDDGTHSQTSDGKGSSVQSRKVARLSSTANIGAAIVEAE NCLEIEAHENKEELKTKLKESLREKSDVFNSKNHEEDKVKLGEPGWKERYYEEKFSAKSLDEMEAVRRDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHY APFASDLTDLGQLNISFELGSPFKPFNQLLGVFPAASSHALPVHYRKLMTDPNSPIFDFYPTDFEVDMNGKRFAWQGIAKLPFIDEARLLAEVQKIEHTL TEEEARRNSMMFDMLFVSSSHPLSESIYLLDNHCKQLTDKERVEVKERINPELRPTCSDGMNGYLSPCAGDTHPPIFRSPVVGMEDILANEVICVIYRLP DPHKHITYPPVGVIFPKKIVDQGDLKPDPVLWHEESGRRPWENDRRNPHGNPHGTIAGRHLGEASHRLVANSLHLKGDRNGYSNHMHGPPQPYIAAPRGP PLSSYSNGLHNQGPHGTLRPRGDYSHAGYPRSTSPRIPPHHDRGYVEPYASAGPNPSYSGRLPQYESENRSGGQHPRHEFHHNGGPRYPNGPGAHISTGP TTYAYQGGYDASPQPPGAGSHQQWGGRFPPPANHNNPRGFGHHQQSGNRFSSLDSRGNKMPPQHGGANRRQPPPSGTYRGAQQSPPGGASRRPHPPAGYG HQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Potri.005G237500 [exp]	0	1	Pt-XRN2.2
AT5G53620			unknown protein		Potri.015G006700 [exp]	7.74	0.8382
AT5G09860		AtTHO1, AtHPR1	nuclear matrix protein-related...		Potri.003G194000 [exp]	8.83	0.8114
AT1G27595			unknown protein		Potri.002G107400 [exp]	9.48	0.8491
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.006G020600 [exp]	10.95	0.8394
AT3G32940			RNA-binding KH domain-containi...		Potri.001G008700 [exp]	12.68	0.8430
AT4G09680		ATCTC1	conserved telomere maintenance...		Potri.002G129000 [exp]	12.96	0.8239
AT1G24300			GYF domain-containing protein ...		Potri.001G326500 [exp]	14.83	0.8451
AT5G08500			Transmembrane CLPTM1 family pr...		Potri.004G134500 [exp]	16.27	0.7890
AT1G23230			unknown protein		Potri.008G133300 [exp]	17.29	0.8166
AT3G14010		CID4	CTC-interacting domain 4 (.1.2...		Potri.001G171100 [exp]	18.16	0.8375

Compare expression of checked genes

Potri.005G237500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.