Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19940 678 / 0 ATGH9B5 glycosyl hydrolase 9B5 (.1) AT1G75680 650 / 0 ATGH9B7 glycosyl hydrolase 9B7 (.1) AT4G11050 398 / 3e-132 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT2G32990 386 / 4e-129 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT1G48930 386 / 1e-127 ATGH9C1 glycosyl hydrolase 9C1 (.1) AT1G64390 384 / 6e-127 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT2G44550 379 / 6e-127 ATGH9B10 glycosyl hydrolase 9B10 (.1) AT2G44570 377 / 9e-126 ATGH9B12 glycosyl hydrolase 9B12 (.1) AT4G02290 377 / 2e-125 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G02800 375 / 3e-125 ATCEL2 cellulase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G023900 [exp] 831 / 0 AT1G19940 672 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.005G115400 [exp] 630 / 0 AT1G19940 586 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.014G157600 [exp] 406 / 1e-136 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G356000 [exp] 399 / 6e-134 AT2G32990 736 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.007G071200 [exp] 396 / 2e-131 AT1G48930 850 / 0.0 glycosyl hydrolase 9C1 (.1) Potri.003G139600 [exp] 389 / 9e-129 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.001G092200 [exp] 385 / 2e-127 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.001G083200 [exp] 373 / 3e-124 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.002G202400 [exp] 369 / 2e-122 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034515 [exp] 732 / 0 AT1G19940 688 / 0.0 glycosyl hydrolase 9B5 (.1) Lus10033156 [exp] 730 / 0 AT1G19940 687 / 0.0 glycosyl hydrolase 9B5 (.1) Lus10014265 [exp] 594 / 0 AT1G75680 584 / 0.0 glycosyl hydrolase 9B7 (.1) Lus10025965 [exp] 560 / 0 AT1G75680 549 / 0.0 glycosyl hydrolase 9B7 (.1) Lus10009724 [exp] 404 / 8e-136 AT2G32990 693 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10017525 [exp] 396 / 4e-133 AT4G09740 645 / 0.0 glycosyl hydrolase 9B14 (.1) Lus10035316 [exp] 393 / 8e-132 AT2G32990 751 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10001833 [exp] 392 / 4e-130 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10010201 [exp] 392 / 6e-130 AT1G48930 812 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10032377 [exp] 390 / 3e-129 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00759 [poplar] [flax] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Potri.005G237700.1 pacid=42805702 polypeptide=Potri.005G237700.1.p locus=Potri.005G237700 ID=Potri.005G237700.1.v4.1 annot-version=v4.1 ATGGGAGTGAAGCCAAGTTCTAGAGGGTGCTTTGGGTGGTTTATCGTGGCAGTAATATTGGCATTGATTATTGGTGCCATTGTTTATACAGTTAAGAAGA AAAGTGAGAAGTCTGAAGGGCCTGCTCCTATTCCAGGGCCTCCTGGCGCTACTGATAAGAAATATGCTGATGCTCTCAAAATTGCTACGCAATTTTTTGA CATTCAAAAATCTGGGAAGTTGGTAGACAAAAAGATTAGTTGGAGAGGGGATTCAGCTCTTAGAGATGGAAGTCAAGCAAAATTAGATCTTTCAAAAGGC ATGTATGATGCTGGGGATCATATGAAGTTTGGTTTGCCAATGGCTTTTACTGCTACAGTATTGTCATGGGCCATCCTTGAGTATGGAGATCAAATGGATG TAGTAAATCAGTTTGAACCGGCGAAGGATTCGCTCAAGTGGATCACTGACTACCTTATCAATGCGCATCCTGAAGCGAATGTGCTCTACATTCAAGTTGG TGACCCTGATACTGATCATGGTTGTTGGGACAGACCTGAAGACATGACCGAGAAGAGGCCACTTACTCAGGTTAATACATCTTTTCCAGGGACAGATGTT GCAGCTGAAACTGCAGCAGCTTTGGCTTCAGCATCTTTGGTGTTTAAATCCGACTCCACATATTCGAGCACGCTGCTTAGGCATGCTAAAGAGTTGTTTA CGTTTGCCGACAAATATAGAGGTTTATATAGTGAAAGTATCCCTGAAGTTGCCACATATTACAACTCAACAGGATATGGAGATGAGCTCTTGTGGGCAGC TAGTTGGCTCTATCATGCAACGGGAGATAAATCATATCTTCAGTACGTGACCGGGCAAAATGGTAAACTCTTTGCTCAATGGGGAAGTCCGACATGGTTC AGTTGGGATAACAAACTTGCAGGAGCGCAGGTTTTGTTGTCCAGACTAACTTTCCTTGGCAACAAAGACACCTCAAACTCAGGCCTTCAAATGTATAGGA AAACGGCTGAGGCAGTTATGTGTGGTCTCATCCCAGATTCTCCAACAGCCACAAAGAGCAGAACAGATGGTGGTCTTATATGGGTCAGTCAATGGAATGC TTTGCAGCATCCCGTTGCTTCCGCATTTTTAGCTGCTCTTTACAGCGATTACATGCTTAGTTCAGGAACTGCAAAGCTATCCTGCAATGGAGATTCATAT AAACCTTCAGAACTTCGGAAATTTGCTAAATCTCAGGCTGATTATGTCTTGGGAAATAATCCTATGAAAATGAGCTATCTTGTCGGTTATGGTGAGAAAT ATCCACAATATGTGCATCATAGGGGAGCTTCAATTCCAACTGGTGCAAAAACTGGTTGCAAGGATGGCTGGACATGGCTTGAAAGTAAGGAACCGAATCC CAACGAAGCAACTGGAGCACTTGTTGGTGGTCCCTTCTTAAATGAAACATTTGTCAGTAATGATCGCAACAACTCAATGCAGGCGGAACCAAGCACATAT AACAGTGCTCTAATTGTTGGCCTGCTGTCAGGTCTTGTCACCACTTCATCTGTGGTTCAATCTTTCACCTGA
AA sequence Show only first row Show all	>Potri.005G237700.1 pacid=42805702 polypeptide=Potri.005G237700.1.p locus=Potri.005G237700 ID=Potri.005G237700.1.v4.1 annot-version=v4.1 MGVKPSSRGCFGWFIVAVILALIIGAIVYTVKKKSEKSEGPAPIPGPPGATDKKYADALKIATQFFDIQKSGKLVDKKISWRGDSALRDGSQAKLDLSKG MYDAGDHMKFGLPMAFTATVLSWAILEYGDQMDVVNQFEPAKDSLKWITDYLINAHPEANVLYIQVGDPDTDHGCWDRPEDMTEKRPLTQVNTSFPGTDV AAETAAALASASLVFKSDSTYSSTLLRHAKELFTFADKYRGLYSESIPEVATYYNSTGYGDELLWAASWLYHATGDKSYLQYVTGQNGKLFAQWGSPTWF SWDNKLAGAQVLLSRLTFLGNKDTSNSGLQMYRKTAEAVMCGLIPDSPTATKSRTDGGLIWVSQWNALQHPVASAFLAALYSDYMLSSGTAKLSCNGDSY KPSELRKFAKSQADYVLGNNPMKMSYLVGYGEKYPQYVHHRGASIPTGAKTGCKDGWTWLESKEPNPNEATGALVGGPFLNETFVSNDRNNSMQAEPSTY NSALIVGLLSGLVTTSSVVQSFT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Potri.005G237700 [exp]	0	1
AT4G27435			Protein of unknown function (D...		Potri.001G403600 [exp]	2.00	0.9588
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G069900 [exp]	4.24	0.9472
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Potri.005G141500 [exp]	4.47	0.9402
AT1G12460			Leucine-rich repeat protein ki...		Potri.001G114500 [exp]	7.14	0.8948
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Potri.008G132100 [exp]	8.06	0.8890
AT2G34410		RWA3	REDUCED WALL ACETYLATION 3, O-...		Potri.011G079400 [exp]	9.16	0.9436
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Potri.016G086400 [exp]	9.16	0.9324
AT3G56230			BTB/POZ domain-containing prot...		Potri.013G083800 [exp]	9.79	0.9319
AT5G58300			Leucine-rich repeat protein ki...		Potri.013G158800 [exp]	10.24	0.9214
AT1G09645			unknown protein		Potri.019G077100 [exp]	10.48	0.9278

Compare expression of checked genes

Potri.005G237700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.