Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45730 512 / 0 eukaryotic initiation factor 3 gamma subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G023300 [exp] 744 / 0 AT2G45730 529 / 0.0 eukaryotic initiation factor 3 gamma subunit family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034521 [exp] 601 / 0 AT2G45730 549 / 0.0 eukaryotic initiation factor 3 gamma subunit family protein (.1) Lus10033150 [exp] 477 / 1e-167 AT2G45730 432 / 4e-150 eukaryotic initiation factor 3 gamma subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04189 [poplar] [flax] Gcd10p Gcd10p family
Representative CDS sequence Show only first row Show all	>Potri.005G238200.1 pacid=42804570 polypeptide=Potri.005G238200.1.p locus=Potri.005G238200 ID=Potri.005G238200.1.v4.1 annot-version=v4.1 ATGTCCCAGAATAACATTCAATCAGATTCAGTTCAAAACCCTAGAGTAACGTGGGAAGGTTGCAGTGTCTTGCTCGACATTAACGATGGCGACCGTTTGG TGTTTGCCCGATTAACAGCTGGCTCGACCTTGAAAATTGGAAATAAGAAGTACTCTTTACGGCCCTTGATTGGATGCCCATTTGGCTCTTCTTTTCAAAT CGAGAATGGAACTGAAGGGCCCTATTTATCTAGGTTTATTCCCTCCACGGAAGAAAGAGAAGGATGTCAAATAGTGGACGAATGTAAGGATAATCGAGCT ATTGTTGATAATAATGAAGCCCAAACCCTTACTAGTGAAGACATAGACGAAATGCGGAGGCAGGGTGCGAAAGGTGACGAGATTATTGAAGCTCTCATTG CCAACAGTGCAACATTTGAGAAGAAAACAGCATTTTCTCAAGAGAAATATAGGATTAAGAAGCAAAAAAAATATGCCCCTAGAGTGCTTTTGAGGCGACC TTCTGCTAGAAGCATATGCGAGGCTTACTTCAAGAAATACCCAAATAGAATCGGATTCCTGCGAGTAGATGCGTTATCCTTGTTGCTTTCACTTGCTAAT GTTTCTGCGAACTCTGATATCCTGTTAGTGGATATGGTTGGTGGCCTTCTTACTGGTGCTGTGGCGGAGCGTTTAGGAGGTACAGGTTGTGTTTGCAATA CTTATCTTGGAAGCACACCATCTCCTGTGGAAATAGTTAGAACATTCAACTTCAATAATGAAATTTGCAAAAGAATTGTGCGGGCTCCTCTGCATGACCT TTGTTCAGACCAAACTGGAACAAAGAAAATTGATTCCTGTAATGCAGAATTAAATGTCCAAATTTCAACTATCAGCATAGAAGAAATGCCACTTCCATCC AAGCATGAGGCTGCAGATTCACAGACTATTGTCTCTCCACAAAGCAAAATGGGCAAAGCCCCTAAAGCTGGAGAAAAGGCTTCAGAAGAGGCACTTAAGT CGTGGAAGGAAAATGGGTTCTCTAGTCTAATAATTGCTGCTCCAGATGCAGATGCTTGGAACTTAGTTAAGGTTCTCCTGCCACTTATATCGTATTCGGC ACCGTTTGCTATCTACCACCAGTATCTTCAGCCTCTTGCAACATGCATGCACAATTTACAGCAAAGTAAAATGGCAATTGGTATGCAAATTTCAGAACCT TGGCTACGTGAATATCAGGTTCTTCCATCAAGAACTCGTCCGTCAATGCAGATGAGTTCCTTTGGGGGTTACATTCTTAGCGGGACCAAGATATGTAGCA GCTAA
AA sequence Show only first row Show all	>Potri.005G238200.1 pacid=42804570 polypeptide=Potri.005G238200.1.p locus=Potri.005G238200 ID=Potri.005G238200.1.v4.1 annot-version=v4.1 MSQNNIQSDSVQNPRVTWEGCSVLLDINDGDRLVFARLTAGSTLKIGNKKYSLRPLIGCPFGSSFQIENGTEGPYLSRFIPSTEEREGCQIVDECKDNRA IVDNNEAQTLTSEDIDEMRRQGAKGDEIIEALIANSATFEKKTAFSQEKYRIKKQKKYAPRVLLRRPSARSICEAYFKKYPNRIGFLRVDALSLLLSLAN VSANSDILLVDMVGGLLTGAVAERLGGTGCVCNTYLGSTPSPVEIVRTFNFNNEICKRIVRAPLHDLCSDQTGTKKIDSCNAELNVQISTISIEEMPLPS KHEAADSQTIVSPQSKMGKAPKAGEKASEEALKSWKENGFSSLIIAAPDADAWNLVKVLLPLISYSAPFAIYHQYLQPLATCMHNLQQSKMAIGMQISEP WLREYQVLPSRTRPSMQMSSFGGYILSGTKICSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45730			eukaryotic initiation factor 3...		Potri.005G238200 [exp]	0	1
AT4G04470		PMP22	Peroxisomal membrane 22 kDa (M...		Potri.004G008700 [exp]	2.64	0.7247
AT4G30996		NKS1	NA\(+\)- AND K\(+\)-SENSITIVE ...		Potri.006G187800 [exp]	5.65	0.7214
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Potri.003G121800 [exp]	7.93	0.6564
AT4G15800		RALFL33	ralf-like 33 (.1)		Potri.013G017400 [exp]	16.27	0.6679	Pt-RALFL23.3
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.001G095600 [exp]	17.60	0.6152
AT3G62790			NADH-ubiquinone oxidoreductase...		Potri.002G204800 [exp]	20.12	0.7089
AT5G65950			unknown protein		Potri.001G457201 [exp]	20.14	0.6632
AT2G18880		VIL3, VEL2	VIN3-like 3, vernalization5/VI...		Potri.002G111600 [exp]	28.84	0.6423
AT5G18850			unknown protein		Potri.010G026900 [exp]	30.04	0.6357
AT3G24570			Peroxisomal membrane 22 kDa (M...		Potri.006G242700 [exp]	30.46	0.5951

Compare expression of checked genes

Potri.005G238200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.