Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75720 82 / 2e-19 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) AT2G17940 64 / 2e-12 Plant protein of unknown function (DUF827) (.1) AT3G51220 60 / 3e-11 Plant protein of unknown function (DUF827) (.1) AT1G12150 45 / 1e-05 Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G023000 [exp] 222 / 8e-74 AT1G75720 108 / 2e-29 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Potri.005G114400 [exp] 118 / 7e-33 AT2G17940 111 / 2e-30 Plant protein of unknown function (DUF827) (.1) Potri.003G009400 [exp] 44 / 4e-05 AT1G58070 48 / 1e-06 unknown protein Potri.001G369200 [exp] 43 / 8e-05 AT5G55860 516 / 4e-176 Plant protein of unknown function (DUF827) (.1) Potri.004G222800 [exp] 41 / 0.0003 AT1G58070 60 / 1e-10 unknown protein Potri.019G021000 [exp] 39 / 0.0008 AT1G75720 42 / 8e-05 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024335 [exp] 107 / 7e-29 AT1G75720 117 / 8e-33 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Lus10041916 [exp] 97 / 5e-24 AT2G17940 102 / 2e-26 Plant protein of unknown function (DUF827) (.1) Lus10028461 [exp] 94 / 4e-23 AT2G17940 104 / 3e-27 Plant protein of unknown function (DUF827) (.1) Lus10036971 [exp] 54 / 5e-09 AT1G75720 75 / 3e-17 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Lus10016626 [exp] 44 / 6e-05 AT5G55860 577 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10022531 [exp] 44 / 8e-05 AT5G55860 573 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10015482 [exp] 42 / 0.0003 AT1G58070 108 / 6e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G238500.1 pacid=42804283 polypeptide=Potri.005G238500.1.p locus=Potri.005G238500 ID=Potri.005G238500.1.v4.1 annot-version=v4.1 ATGGAAGGTGAAGAAGGAGTGATCGTACTCAAAAGGGCTGAGATTGATACTCGAGCACCCTTCAGGTCAGTTAAAGAGGCCGTCACATTGTTCGGGGAGA AAGTTTTAGCTGAGGAGCTCTATGCCAATAAGCTCAAACAGATGCACGTTGGAGGAATTGAATATGGGCAGGGCACTTCCAGGCTTGGAACAGTCACAGC AGAGCTAAAGGAGACGAAACAAAGTCTCGAAAACGCCAAAGAACAAAGGACGCTAATGGCAAATTGCCTTTCTTCGCTTCAAGAAGAACTTGAGAGAACA AGGAGAGAGCTTCAACAATTGAAGGAACGTGAGGTCGAAAGGCAACTGATAGAATCTGAAATTGAAGTTGTCAAGGTTGTTGAAGACACAACAAAATTTG AAGTCAAAATGCAGACATCGAATGAAGAAGGGACACAGTTTCAAAACAAGAGATATGTGATGCAGACATCGAATGAAGAAGGGACACAGTTTCAAAACAA GAGATATGTGACATTTGCTAATCCGCCTTCCTTGACACAAGTTCTAATGCCACAAGGAGTTGAAGCACTAGAGAGGCACCCTTCTCTAAGGAAAAAGAAG AAGAAGCCTTTGATCCCTCTAATAGGAGGGATTTTCTCTAAGAAATTCGGAAAATGA
AA sequence Show only first row Show all	>Potri.005G238500.1 pacid=42804283 polypeptide=Potri.005G238500.1.p locus=Potri.005G238500 ID=Potri.005G238500.1.v4.1 annot-version=v4.1 MEGEEGVIVLKRAEIDTRAPFRSVKEAVTLFGEKVLAEELYANKLKQMHVGGIEYGQGTSRLGTVTAELKETKQSLENAKEQRTLMANCLSSLQEELERT RRELQQLKEREVERQLIESEIEVVKVVEDTTKFEVKMQTSNEEGTQFQNKRYVMQTSNEEGTQFQNKRYVTFANPPSLTQVLMPQGVEALERHPSLRKKK KKPLIPLIGGIFSKKFGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75720			Plant protein of unknown funct...		Potri.005G238500 [exp]	0	1
AT3G08880			unknown protein		Potri.012G107200 [exp]	1.00	0.7990
AT3G25980		MAD2	MITOTIC ARREST-DEFICIENT 2, DN...		Potri.010G055100 [exp]	3.46	0.7514	MAD2.2
AT2G44065			Ribosomal protein L2 family (....		Potri.017G007700 [exp]	4.00	0.7064
AT3G02430			Protein of unknown function (D...		Potri.013G116300 [exp]	18.02	0.6918
AT5G48870		SAD1	SUPERSENSITIVE TO ABA AND DROU...		Potri.009G072500 [exp]	19.36	0.6656	SAD1.1
AT2G04940			scramblase-related (.1)		Potri.015G079500 [exp]	19.74	0.7239
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Potri.002G018700 [exp]	23.81	0.7102	Pt-SKP1.2
AT1G72480			Lung seven transmembrane recep...		Potri.001G166500 [exp]	24.16	0.7371
AT5G57330			Galactose mutarotase-like supe...		Potri.003G187300 [exp]	29.13	0.7467
AT1G80500			SNARE-like superfamily protein...		Potri.001G043400 [exp]	32.31	0.6980

Compare expression of checked genes

Potri.005G238500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.