Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47840 643 / 0 HXK3 hexokinase 3 (.1) AT4G29130 551 / 0 GIN2, ATHXK1 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) AT2G19860 531 / 0 ATHXK2 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) AT1G50460 441 / 2e-151 ATHKL1, HKL1 hexokinase-like 1 (.1) AT3G20040 429 / 1e-146 HKL2, ATHXK4 HEXOKINASE-LIKE 2, Hexokinase (.1) AT4G37840 311 / 9e-101 HKL3 hexokinase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G088300 [exp] 542 / 0 AT4G29130 743 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.001G190400 [exp] 541 / 0 AT4G29130 649 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.001G254800 [exp] 471 / 4e-163 AT1G50460 620 / 0.0 hexokinase-like 1 (.1) Potri.009G050000 [exp] 451 / 6e-155 AT1G50460 576 / 0.0 hexokinase-like 1 (.1) Potri.007G009300 [exp] 410 / 3e-139 AT4G37840 520 / 0.0 hexokinase-like 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024336 [exp] 810 / 0 AT1G47840 646 / 0.0 hexokinase 3 (.1) Lus10002041 [exp] 798 / 0 AT1G47840 643 / 0.0 hexokinase 3 (.1) Lus10038287 [exp] 525 / 0 AT4G29130 734 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10012946 [exp] 513 / 2e-179 AT2G19860 701 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10037588 [exp] 511 / 1e-178 AT4G29130 709 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10006843 [exp] 493 / 9e-172 AT4G29130 710 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10005019 [exp] 431 / 3e-147 AT1G50460 670 / 0.0 hexokinase-like 1 (.1) Lus10019038 [exp] 420 / 6e-143 AT1G50460 636 / 0.0 hexokinase-like 1 (.1) Lus10025815 [exp] 412 / 1e-138 AT2G19860 582 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10011584 [exp] 271 / 9e-86 AT4G37840 374 / 1e-125 hexokinase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00349 [poplar] [flax] Hexokinase_1 Hexokinase CL0108 [poplar] [flax] Actin_ATPase PF03727 [poplar] [flax] Hexokinase_2 Hexokinase
Representative CDS sequence Show only first row Show all	>Potri.005G238600.1 pacid=42805663 polypeptide=Potri.005G238600.1.p locus=Potri.005G238600 ID=Potri.005G238600.1.v4.1 annot-version=v4.1 ATGTCGGTTGCCGCAACCACTTCACCGGCCTTTGGAACACTTTACGTTTCCCCTTCTCCTAGGAGCAGGGGCACGCCTCGAGTAACGATGGCTCTCCGAT CTGTTGTTTCAGTAGGCTCGATCTTGACTAAGTTACAGCAAGACTGTGCAACTCCTTTACCGGTCATTCGCCACGTGGCGGATTCCATGACTGCTGACAT GCGAGCTGGGCTTGCTGTTGATGGTGGCAGCAATCTCAAGATGATACTCAGCTATGTTGATAGCTTGCCTAGCGGAAATGAGAAGGGATTGTTTTATGCA TTGGATCTTGGAGGCACAAATTTTCGGGCGCTGAGGGTGCAGTTAGGTGGGAAAGAAGAGAGAGTTGTTGCCACGGAATTTGAGCAATTATCGATTCCTC AAGGGCTTATGTTTGGTACATCTGAGGAGCTTTTCGATTTTATTGCATCCACACTGGCTGGATTTGCAGAAAAGGAGAGCAAGAAATTTCACCTGCCGCA TGGAAGGCAAAGGGAAATTGGGTTCACATTTTCTTTCCCTGTGAAGCAGACATCCATTGACTCTGGCATATTAATGAAGTGGACCAAGGGTTTTGCAGTC TCCGGAACGGCAGGGCGAGATGTCGTTGCTTGTCTGAATGAAGCTATGGAAAGACAAGGATTGGATATGCGTGTGTCTGCCCTGGTTAATGATACTGTGG GAACTTTAGCGGGAGCAAGATACTGGGATGATGATGTCATGGTTGCTGTTATTTTGGGTACTGGAACTAATGCATGCTATGTAGAACGGACGGATTGCAT TCCAAAACTACAGGGGCCTAAGTCTTCTTCTGGAAGAACAATTATTAACACAGAATGGGGAGCGTTTTCAGATGGTATTCCTTTGACTGTGTTTGATAGA GATATGGATGCAGCTAGTATCAATCCTGGTGAGCAGATATTTGAGAAGACAATCTCTGGAATGTATCTAGGAGAAATTGCACGGCGAGCTCTAGTCACAA TGGCTGGAGAAGGTTCTTTGTTTGGCAGGGCCGTCCCGAATAAACTATCCACACCTTTCGCACTCCGGACACCAGATATATGCGCAATGCAGCAGGACAA TTCAGATGATCTTCAAGCCGTTGGTTCAATTCTACATAATGTAGCTGGGGTTGAATCCAGCTTAAGTGCAAGGAAGATTGTATTAGAGGTTTGCGATGCC CTTGTAAAGAGAGGTGGACGCTTGGCAGGTGCAGGAATTGTTGGGATTCTTCAAAAAATGGAAGAGGATTCAAAAGGTACCATCTTCAATAAAAGAACAG TGGTTGCCATGGACGGTGGATTATATGAGCACTACCCTCAGTACAGAAGTTACCTTCAAGATGCTGTCACCGAGCTTCTGGGATCAGAAATTTCAAAAAA CATAGTCATAGAACATTCAAAGGATGGGTCTGGTATTGGAGCTGCTCTCCTAGCAGCCACAAACTCCAAGTATGATCATGATTTTTAG
AA sequence Show only first row Show all	>Potri.005G238600.1 pacid=42805663 polypeptide=Potri.005G238600.1.p locus=Potri.005G238600 ID=Potri.005G238600.1.v4.1 annot-version=v4.1 MSVAATTSPAFGTLYVSPSPRSRGTPRVTMALRSVVSVGSILTKLQQDCATPLPVIRHVADSMTADMRAGLAVDGGSNLKMILSYVDSLPSGNEKGLFYA LDLGGTNFRALRVQLGGKEERVVATEFEQLSIPQGLMFGTSEELFDFIASTLAGFAEKESKKFHLPHGRQREIGFTFSFPVKQTSIDSGILMKWTKGFAV SGTAGRDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDDDVMVAVILGTGTNACYVERTDCIPKLQGPKSSSGRTIINTEWGAFSDGIPLTVFDR DMDAASINPGEQIFEKTISGMYLGEIARRALVTMAGEGSLFGRAVPNKLSTPFALRTPDICAMQQDNSDDLQAVGSILHNVAGVESSLSARKIVLEVCDA LVKRGGRLAGAGIVGILQKMEEDSKGTIFNKRTVVAMDGGLYEHYPQYRSYLQDAVTELLGSEISKNIVIEHSKDGSGIGAALLAATNSKYDHDF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47840		HXK3	hexokinase 3 (.1)		Potri.005G238600 [exp]	0	1
AT5G57330			Galactose mutarotase-like supe...		Potri.003G187300 [exp]	2.44	0.8586
AT5G41760			Nucleotide-sugar transporter f...		Potri.001G094600 [exp]	3.74	0.8447
AT5G51150			Mitochondrial import inner mem...		Potri.015G111200 [exp]	14.28	0.8228
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Potri.016G119800 [exp]	15.23	0.7634
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Potri.013G055100 [exp]	20.27	0.8345
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.019G087700 [exp]	21.00	0.7683	Pt-SERK2.3
AT2G46760			D-arabinono-1,4-lactone oxidas...		Potri.002G178400 [exp]	21.49	0.7398
AT4G17430			O-fucosyltransferase family pr...		Potri.003G079400 [exp]	22.91	0.7569
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Potri.001G392200 [exp]	28.89	0.8192	Pt-GF14.4
AT3G09730			unknown protein		Potri.006G130600 [exp]	38.06	0.7017

Compare expression of checked genes

Potri.005G238600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.