Plant FIBer expression Database

Potri.005G238800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G75730 79 / 6e-15 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G022800
[exp]
1056 / 0 AT1G75730 84 / 2e-16 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G238800.3 pacid=42803056 polypeptide=Potri.005G238800.3.p locus=Potri.005G238800 ID=Potri.005G238800.3.v4.1 annot-version=v4.1
ATGATAGAAATGGACAAGAGTAAAGACGTGAGGCCAAGAGCCAGTCGGTTCTCAAGACAACAGATTAAGCAATCTGGACACAAGCTTCTCTCTGGTTCGA
ATGGTGGTGACTTTGTTGTTTCTTTGGAGAAATCGAAGAGAATTAAAAGATTGAGTGCTGTTAATAATAATATTAATAAAGGGAGTTGTAGTTACGAGGT
GGAGAAAGAAAAGAAGTGTGAGATGGGTGGTGGTGGTGGTTGTGAGGAGTCTGACAAAGAAGTTCAAGCACCGTCTACTTTTATTGGTGTTGTTAGTACA
AGCAACAAAAGATTCAAGCTTCCCAGAAAGTTTTTGGATGATTGCGATGGTGTTGATCATGCAACTGTTCCAAGGAAGCTACGGTCAGCCATGAAGAAGC
GCAATCGCGAATCTATCTCTCCACATGTTCCTGATTCAAAGAAGCTGAACCACCCTAACAGTGGAGTGGAATCTTCCAAAAGGGATGGTTTAAAGAAATC
GAGACTGAATGTGAAACAACCAAGCCCAGACTGGTCCAGAGAACAGAGTGTCCGTGGGCCAATAACCAAAGACGAGGAAGAAGTTGTGGAGACCTTATAT
TCTTTGGCAGGAATGTTCACTGACAACGAAGAACCTAAAAATGACTGTAAATTGGATAATACTTCTTTGGATGCAAGTCCTTCAACATTGCAAGAGCCCA
CTGTAAAAGAGGACTTGAATCTAATTTCCCTCCGGAGAATTGACGAGGCTGCTGAGAAAACATTGCTTGACGAAACTCCTAGAGTTGATTATTTGAACAA
GCCTGGTGCTCAAGAACGACCTTATCTGCCCACTGATAAAATCCAAGGTGAATTAGGCAGTCGTGCTACTCAAATGAATCTGCCCCCTATTTTGGCTAAA
CAGGAGGAGCTAAAGTCATTGTGCAATTCTATCAATCTTTTCATTGCCCCTGAGCAATACCGAAATACTCCCAAAGTGAAGCACTCCACACGGTTGGAGA
CCTCACTTGAGAGAAAGCCAGACATTGCATTGGGGCTGACAACAACTGTAAGTCAACTAGATCAACGGCATACAATCTGTCAATCCAAGAACAATGGTCC
AGCATTGTGGCCAGGTTTGTCTTCAACTGTATCAAGTGGTGCATGCAATCATGGTTCTTCATCACAATCCTCTGCCACCAAATTTCCTTCTTGGATGGAT
ACTGCTCTTGGTGCTACCAGGCCCAATTCATTCCAGAATTGTTCGTCTATTGGAAAGGTTTCTAAAGTCAGCACCGATAAAAGATCATTGAAGAGGTCCA
CAACTCATGTTTACATAAGTCATCTCATTCGGGTTTTACAAATTCCAGAGAGCAAAGACAGCTTGCCACTACATCTGAATCAACCGAGGCCACAGGATAT
ATTAAGGCAAGGTGCATTCATGACAATGAACGACTTCAATGGCAACAGGAATGGTTTGAATGGAGCTACATCTGCTAGAGCCATAATTAACATGGTCGAC
AAGAATTCAAATCAAGTTGAAATGGGTACTCTTCTACAGAGAACACTCCAAGATCAGCCACAGACTTCATCAGCATCTGGGGTGCACAATTCTCAGAAGC
AGACTTTCAATTTCTTGTCCTTGTCAGCTGACGGGAGCGGCTTAGAAGCTAATAACAGTTCCAGTGGGGTTGGAAAGAGGTCTGAACAATCGGCTCAGCT
GCAATTTCCTTACCTGCACTCACATTTGCAACAGCAACATTCCACACTCGTGCCTTTCCCTATGTCCCAAACATATTACTCATCCTCATCTCACCCTGAT
CAGCCTGCAGCAGCACAGCAGGCCCAGATTCAACAACCCTCCTACCTTGGCCACTTGTACTGTGGTACTCGTGCAAGTCCTACGGGCTTCACAAAGCAGC
AACAGAAACAGAGCCAACAACAGCAGCAGCTGCAGCACCAACAAAACCGGCTTTGGGCAGCTCAGTTAGCAGCAGCTCAATATAGGACTCTTGGAAATTC
CACTGCTATGACTCAATTTCCAAACTGGCAAAATGGAAGGCAAGACTCGCCTGCACAGATATCATTCGCCCAAACCATCATCCCTACTTCGTCATCTCAA
GAAGCAATTGGTCCCAAGCACGCTCAAATCTCTCAGCAGCAGCAGCTTATGACCATTACTACATTGCCTCATGCTAGGGTCAGAAGACAAGACCACCATC
TCTCTTCTGTTTATGAAGAAACTGGAGGTGGGTTTCGAACTGGTGGTGCACTGCCATTGCAATTACTCTGTAACGAGAGCCTATGA
AA sequence
>Potri.005G238800.3 pacid=42803056 polypeptide=Potri.005G238800.3.p locus=Potri.005G238800 ID=Potri.005G238800.3.v4.1 annot-version=v4.1
MIEMDKSKDVRPRASRFSRQQIKQSGHKLLSGSNGGDFVVSLEKSKRIKRLSAVNNNINKGSCSYEVEKEKKCEMGGGGGCEESDKEVQAPSTFIGVVST
SNKRFKLPRKFLDDCDGVDHATVPRKLRSAMKKRNRESISPHVPDSKKLNHPNSGVESSKRDGLKKSRLNVKQPSPDWSREQSVRGPITKDEEEVVETLY
SLAGMFTDNEEPKNDCKLDNTSLDASPSTLQEPTVKEDLNLISLRRIDEAAEKTLLDETPRVDYLNKPGAQERPYLPTDKIQGELGSRATQMNLPPILAK
QEELKSLCNSINLFIAPEQYRNTPKVKHSTRLETSLERKPDIALGLTTTVSQLDQRHTICQSKNNGPALWPGLSSTVSSGACNHGSSSQSSATKFPSWMD
TALGATRPNSFQNCSSIGKVSKVSTDKRSLKRSTTHVYISHLIRVLQIPESKDSLPLHLNQPRPQDILRQGAFMTMNDFNGNRNGLNGATSARAIINMVD
KNSNQVEMGTLLQRTLQDQPQTSSASGVHNSQKQTFNFLSLSADGSGLEANNSSSGVGKRSEQSAQLQFPYLHSHLQQQHSTLVPFPMSQTYYSSSSHPD
QPAAAQQAQIQQPSYLGHLYCGTRASPTGFTKQQQKQSQQQQQLQHQQNRLWAAQLAAAQYRTLGNSTAMTQFPNWQNGRQDSPAQISFAQTIIPTSSSQ
EAIGPKHAQISQQQQLMTITTLPHARVRRQDHHLSSVYEETGGGFRTGGALPLQLLCNESL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G75730 unknown protein Potri.005G238800
[exp]
0 1
AT5G22800 EMB86, EMB263, ... EMBRYO DEFECTIVE 86, EMBRYO DE... Potri.009G141300
[exp]
3.16 0.9708
AT5G35170 adenylate kinase family protei... Potri.018G113400
[exp]
4.69 0.9668
AT4G22890 PGR5-LIKEA, PGR... PGR5-LIKE A (.1.2.3.4.5) Potri.001G113000
[exp]
6.32 0.9600
AT1G64860 SIGB, SIG2, SIG... RNApolymerase sigma subunit 2,... Potri.013G075400
[exp]
7.14 0.9662
AT5G12130 ATTERC, PDE149 PIGMENT DEFECTIVE 149, TELLURI... Potri.006G133900
[exp]
7.34 0.9547
AT1G17220 FUG1 fu-gaeri1, Translation initiat... Potri.011G140100
[exp]
9.59 0.9605
AT1G04920 ATSPS3F sucrose phosphate synthase 3F ... Potri.001G317600
[exp]
11.22 0.9569
AT4G24090 unknown protein Potri.001G084500
[exp]
14.42 0.9558
AT5G64940 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-R... Potri.005G083200
[exp]
16.91 0.9502
AT3G03710 PDE326, PNP, RI... resistant to inhibition with F... Potri.019G040100
[exp]
19.41 0.9391

Potri.005G238800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.