Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34860 927 / 0 A/N-InvB alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) AT4G09510 879 / 0 A/N-InvI, CINV2 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) AT1G22650 875 / 0 A/N-InvD alkaline/neutral invertase D, Plant neutral invertase family protein (.1) AT1G35580 835 / 0 A/N-InvG, CINV1 alkaline/neutral invertase G, cytosolic invertase 1 (.1.2.3) AT1G72000 823 / 0 A/N-InvF alkaline/neutral invertase F, Plant neutral invertase family protein (.1) AT5G22510 584 / 0 INV-E, At-A/N-InvE Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) AT1G56560 569 / 0 A/N-InvA alkaline/neutral invertase A, Plant neutral invertase family protein (.1) AT3G06500 563 / 0 A/N-InvC alkaline/neutral invertase C, Plant neutral invertase family protein (.1) AT3G05820 560 / 0 At-A/N-InvH Arabidopsis alkaline/neutral invertase H, alkaline/neutral invertase H, invertase H (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G167500 [exp] 935 / 0 AT4G34860 994 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.009G129000 [exp] 916 / 0 AT4G34860 972 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.019G082000 [exp] 908 / 0 AT4G09510 981 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.013G110800 [exp] 894 / 0 AT4G09510 992 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.002G173600 [exp] 742 / 0 AT4G09510 741 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.008G101500 [exp] 597 / 0 AT3G06500 911 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Potri.004G186500 [exp] 586 / 0 AT5G22510 913 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.010G236100 [exp] 580 / 0 AT5G22510 897 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.008G024100 [exp] 580 / 0 AT5G22510 894 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033144 [exp] 925 / 0 AT4G34860 944 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10034525 [exp] 919 / 0 AT4G34860 943 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10042390 [exp] 907 / 0 AT4G34860 982 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10026284 [exp] 905 / 0 AT4G34860 979 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10006078 [exp] 898 / 0 AT4G09510 1001 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10014824 [exp] 896 / 0 AT4G09510 987 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10016938 [exp] 895 / 0 AT4G09510 985 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10009441 [exp] 731 / 0 AT4G09510 831 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10019532 [exp] 592 / 0 AT5G22510 922 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10043375 [exp] 592 / 0 AT5G22510 918 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF12899 [poplar] [flax] Glyco_hydro_100 Alkaline and neutral invertase
Representative CDS sequence Show only first row Show all	>Potri.005G239400.1 pacid=42803587 polypeptide=Potri.005G239400.1.p locus=Potri.005G239400 ID=Potri.005G239400.1.v4.1 annot-version=v4.1 ATGTCTCCGATTGCTGCCATGGATGTGTGTCAAAATGCAAGTGTCAAAAACTTTGAGGCAGCAGGCTCTATTTTTGAAATTGATTCCGAATTCTTAAGAT TGTCTGACAAGCCTAGACCTGTCAATGTGGAGAGAAAGAGATCCTTCGATGAAAGATCATTTAGTGAAAATTCCTTTCGCATAATAGACCATCTTGAGAA TTTGTCTCCCGCAGGAAGAAGGTCTGGTTTTAATACACCAAGGTCATGTGGTTTTGAATCACACCCCATGGTAGTCGATGCGTGGGAATCGTTGAGAAGA ACATTGGTTTACTTCCGGAGCCAACCTGTCGGGACTATCGCTGCATTGGACCATTCTGTCGAAGAACTCAACTATGATCAGGTATTTGTTAGAGATTTTG TACCGAGTGCTTTAGCTTTTCTGATGAATGGGGAGCACGAGGTAGTCAGGAATTTTCTTTTGAAAACCCTTCATCTCCAGTCACGTGAGAAAATGGTAGA CCAGTTCAAGCTAGGAGCAGGAGTGATGCCAGCAAGTTTTAAAGTGCTCCATCATCCTGATAGAAATATTGAGACTTTAATGGCTGACTTTGGCGAGAGT GCGATAGGAAGAGTGGCTCCTGTTGATTCTGGATTTTGGTGGATTATATTGCTTCGTGCATATACCAAGTCCACAGGAGATTCTTCCTTGGCTGAAATGC CTGAATGTCAAAGGGGTATGCGCCTTATCCTGAATCTGTGTCTGTCAGAAGGCTTTGACACATTCCCAACTCTGCTCTGTGCCGATGGATGCTGTATGAT CGACCGTCGAATGGGTGTGTATGGATATCCTATTGAGATTCAAGCACTCTTCTTTATGGCACTAAGGTGTGCTTTGATTCTACTCAAGCAAGATGATGAA GGGAAGGAATTTGTGGATCGGGTAGCTACGCGGCTCCATGCTTTAAGCTATCACATGCGCAATTATTTTTGGCTAGACATGAAGCAACTCAACGACATAT ATCGGTATAAGACAGAGGAGTATTCTCATACTGCTGTTAACAAGTTCAATGTTATGCCTGATTCTCTTCCAGATTGGGTTTTCGATTTCATGCCGACTCG TGGTGGCTACTTCATTGGAAATGTTAGTCCTGCGAGAATGGACTTTCGTTGGTTCTGTTTAGGTAATTGTGTTGCAATTTTGTCATCTCTGGCAACTCCT GAGCAAGCTTCAGCAATAATGGATCTAATTGAATCTCGATGGGAAGAACTGGTTGGAGAAATGCCACTGAAAATCTGTTATCCAGCCCTAGAAAGTCATG AATGGCGTACTGTGACCGGCTGTGATCCGAAGAATACTAGGTGGAGTTACCACAATGGAGGGTCCTGGCCAGTCCTTTTATGGCTTCTAACAGCAGCTTG TATCAAGACTGGCCGTCCTCAAATTGCTAGGCGTGCCATTGAACTTGCTGAAAGCCGGTTATCAAAGGATCACTGGCCTGAATACTATGATGGCAAGCTT GGTTTATACGTTGGAAAGCAGGCTCGCAAATTCCAAACGTGGTCCATTGCCGGCTACTTGGTTGCCAAAATGATGCTTGAAGATCCATCTCATCTTGGCA TGATTTCACTCGAGGAAGACAAACAAATTACGCACTTGGTGAAAAGATCTGCTTCGTGGACTTGTTGA
AA sequence Show only first row Show all	>Potri.005G239400.1 pacid=42803587 polypeptide=Potri.005G239400.1.p locus=Potri.005G239400 ID=Potri.005G239400.1.v4.1 annot-version=v4.1 MSPIAAMDVCQNASVKNFEAAGSIFEIDSEFLRLSDKPRPVNVERKRSFDERSFSENSFRIIDHLENLSPAGRRSGFNTPRSCGFESHPMVVDAWESLRR TLVYFRSQPVGTIAALDHSVEELNYDQVFVRDFVPSALAFLMNGEHEVVRNFLLKTLHLQSREKMVDQFKLGAGVMPASFKVLHHPDRNIETLMADFGES AIGRVAPVDSGFWWIILLRAYTKSTGDSSLAEMPECQRGMRLILNLCLSEGFDTFPTLLCADGCCMIDRRMGVYGYPIEIQALFFMALRCALILLKQDDE GKEFVDRVATRLHALSYHMRNYFWLDMKQLNDIYRYKTEEYSHTAVNKFNVMPDSLPDWVFDFMPTRGGYFIGNVSPARMDFRWFCLGNCVAILSSLATP EQASAIMDLIESRWEELVGEMPLKICYPALESHEWRTVTGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRPQIARRAIELAESRLSKDHWPEYYDGKL GLYVGKQARKFQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQITHLVKRSASWTC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Potri.005G239400 [exp]	0	1
AT1G71480			Nuclear transport factor 2 (NT...		Potri.013G100600 [exp]	2.82	0.9967
AT5G24090		ATCHIA	chitinase A (.1)		Potri.014G091700 [exp]	2.82	0.9977	CHI3.4
AT3G17675			Cupredoxin superfamily protein...		Potri.013G061300 [exp]	3.00	0.9978
AT5G48450		SKS3	SKU5 similar 3 (.1)		Potri.008G032100 [exp]	4.58	0.9977
					Potri.007G117900 [exp]	4.58	0.9969
					Potri.005G130750 [exp]	5.91	0.9970
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Potri.016G015800 [exp]	6.24	0.9951
AT5G39160			RmlC-like cupins superfamily p...		Potri.011G163300 [exp]	6.48	0.9948	GER2.30
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Potri.012G133200 [exp]	7.48	0.9975
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.008G031500 [exp]	7.48	0.9919

Compare expression of checked genes

Potri.005G239400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.