Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19980 246 / 3e-79 cytomatrix protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G022200 [exp] 517 / 0 AT1G19980 203 / 2e-62 cytomatrix protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021095 [exp] 258 / 2e-83 AT1G19980 195 / 3e-59 cytomatrix protein-related (.1) Lus10017215 [exp] 255 / 2e-82 AT1G19980 187 / 1e-56 cytomatrix protein-related (.1) Lus10034526 [exp] 210 / 9e-66 AT1G19980 137 / 8e-38 cytomatrix protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G239500.1 pacid=42802365 polypeptide=Potri.005G239500.1.p locus=Potri.005G239500 ID=Potri.005G239500.1.v4.1 annot-version=v4.1 ATGGGTACTTCAAATTGCACTCAATTAGTAACTTCAGATCGTGAAAAATGGGATAAAGTATTCGGTGGCCTAGTAAAATTACTAAAGAGCCAACAAGAAC AGCTCGAAACCCTCTTAAAAGAGAGGCACTTTCTTGAAGATCGCATTAAAACACAACACGAAAGATGGGTTTCTGATATTCGTCTCTATGAAGATCATAT TTCACAGATTAATGGGGATTTGGTGGAGAAAGATATGGCCTGTGTGCTTGAGGCTGCGAAAAGTGATTTGATGTTGGGATTGAAGCAGAGAGAGGCATCT CTTCACAAATCGAGATTAGAGGAAACCGAAGATGAATTGGCAGATTTTCAAGCATGGTTTAGCTACCTCTCTCAAAACTTAAAAGCAAATTCTGAAGAAA CTGCCAATGGAAAGGGAGGTGGGAGTAGTGATATGAAGTCTGGTGGTGCTAAAAAGTTGGAAGCCAAAGTAGAAAGGCTAAAGCTTGAAAATGAGAAGCT TGTTTCTGAAAAGAATTCTGAAGTATCTGCACTCCTGAAAGAGAAAACTTTTGTGTGGAATCAATATAATATTCTAGAAAGCAATCTGACCAGTAAATTA AGGAGTAAGGAAGCTGAAGTTGAAAAGGCGAATGAGAAGATAGCAGAAGTTCTTGCCACCGCAGAATTGCTCCAATCCTCTAATGATGAGAAGGATGAAA TTATTCGCAGACTGAATATGAAGGTGGCCAAGATGGAAGCTGATGCAGAAAAATGGAAGGGAGAAATTTCCAAACTTTCCCAGGAGTTGGAATTTATTAG AAAGTCAAGAAGTGCTCAAGTTACATCGATAATGAAACCTTGCAGTGCACCAACTAGATCTTCAAATTTGGGAGTCAAAAGCTGTGGCAGAAATTTTAGC AATCTCGTTGACAGGAAAGTATCGGCACCTATACTGGCCACTGTTCCTTCAAAAGGTTCTGACAAGGGTAGCAGAAGCTTGAAGAAAAAAAGGATTGACA TTTTGGAAACTCCGAAACTGTTCTCTTCTACCTTTGAAGTTCCTAAAGTGAAGGTCCCATCTACTCCTGCCTAA
AA sequence Show only first row Show all	>Potri.005G239500.1 pacid=42802365 polypeptide=Potri.005G239500.1.p locus=Potri.005G239500 ID=Potri.005G239500.1.v4.1 annot-version=v4.1 MGTSNCTQLVTSDREKWDKVFGGLVKLLKSQQEQLETLLKERHFLEDRIKTQHERWVSDIRLYEDHISQINGDLVEKDMACVLEAAKSDLMLGLKQREAS LHKSRLEETEDELADFQAWFSYLSQNLKANSEETANGKGGGSSDMKSGGAKKLEAKVERLKLENEKLVSEKNSEVSALLKEKTFVWNQYNILESNLTSKL RSKEAEVEKANEKIAEVLATAELLQSSNDEKDEIIRRLNMKVAKMEADAEKWKGEISKLSQELEFIRKSRSAQVTSIMKPCSAPTRSSNLGVKSCGRNFS NLVDRKVSAPILATVPSKGSDKGSRSLKKKRIDILETPKLFSSTFEVPKVKVPSTPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19980			cytomatrix protein-related (.1...		Potri.005G239500 [exp]	0	1
AT1G51130			Nse4, component of Smc5/6 DNA ...		Potri.003G212600 [exp]	2.00	0.7348
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Potri.003G186900 [exp]	2.82	0.7832
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Potri.005G019800 [exp]	6.70	0.7139
AT1G80710		DRS1	DROUGHT SENSITIVE 1 (.1)		Potri.018G112500 [exp]	11.61	0.7221
AT3G44716			unknown protein		Potri.009G148200 [exp]	12.32	0.7218
AT3G18580			Nucleic acid-binding, OB-fold-...		Potri.012G058800 [exp]	18.70	0.7103
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Potri.001G329700 [exp]	21.90	0.7127
AT4G18030			S-adenosyl-L-methionine-depend...		Potri.001G146400 [exp]	26.72	0.6872
AT5G23910			ATP binding microtubule motor ...		Potri.015G146000 [exp]	28.14	0.6575
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Potri.006G153900 [exp]	31.81	0.7047	Pt-SYNC3.1

Compare expression of checked genes

Potri.005G239500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.