Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06880 238 / 1e-63 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G23030 103 / 3e-22 PUB11 ARM repeat superfamily protein (.1) AT1G71020 99 / 3e-21 ARM repeat superfamily protein (.1.2) AT1G29340 86 / 1e-16 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT3G19380 82 / 1e-15 PUB25 plant U-box 25 (.1) AT4G21350 81 / 2e-15 PUB8, B80 plant U-box 8 (.1) AT1G49780 80 / 3e-15 PUB26 plant U-box 26 (.1) AT3G46510 81 / 5e-15 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G42340 78 / 3e-14 PUB15 Plant U-Box 15 (.1) AT1G27910 78 / 4e-14 ATPUB45 ARABIDOPSIS THALIANA PLANT U-BOX 45, plant U-box 45 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G021600 [exp] 2555 / 0 AT3G06880 231 / 3e-61 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.018G083600 [exp] 768 / 0 AT3G06880 219 / 1e-57 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G220800 [exp] 244 / 3e-65 AT3G06880 1115 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G117300 [exp] 180 / 1e-45 AT3G06880 53 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G118600 [exp] 169 / 2e-42 AT3G06880 54 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G214100 [exp] 125 / 1e-28 AT5G42340 84 / 4e-16 Plant U-Box 15 (.1) Potri.001G012300 [exp] 102 / 8e-22 AT5G42340 72 / 7e-13 Plant U-Box 15 (.1) Potri.008G128600 [exp] 94 / 3e-19 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.010G113900 [exp] 91 / 3e-18 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013551 [exp] 1882 / 0 AT5G28540 506 / 6e-159 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017257 [exp] 1822 / 0 AT3G06880 186 / 3e-47 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10034937 [exp] 784 / 0 AT3G06880 248 / 6e-67 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023666 [exp] 654 / 0 AT3G06880 246 / 5e-68 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10036201 [exp] 155 / 7e-38 AT3G06880 61 / 5e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10038340 [exp] 137 / 2e-32 AT3G06880 66 / 1e-10 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023667 [exp] 129 / 1e-30 AT2G28830 84 / 9e-17 PLANT U-BOX 12 (.1) Lus10039197 [exp] 123 / 5e-28 AT1G23030 79 / 2e-14 ARM repeat superfamily protein (.1) Lus10013745 [exp] 116 / 7e-26 AT1G23030 78 / 2e-14 ARM repeat superfamily protein (.1) Lus10043471 [exp] 96 / 1e-19 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.005G240100.4 pacid=42803554 polypeptide=Potri.005G240100.4.p locus=Potri.005G240100 ID=Potri.005G240100.4.v4.1 annot-version=v4.1 ATGGAAGGAAGCTATAGGTTTGCGATGGACCAAAAGGATATTGTGAGGTTCTTGATTACCACCGTGGGAAGTTTCACACAAGATCGTTTGATCAATAAAG AGCAAAGAACCCAGCACAAAGAACAGTGTGCTGAGAGATTAGCAGCTGAAGATGGGAGCTGTTACAAAGATACAGAGGTTCGATACTCCGATCAAGCAGT ATTAGCAAATTTGGATTGGGGTATAGAAGCCCTTGAAGAAGCCATTGACACCTCCAATATGGAGACTAAGCTGGCACGATTAGATTATGCAGAGAAGATG CTGCAAGTTTGTGCCTTGTTGAACTCTGACCAAAGAACAGCTGGGGTCCCAAATTTCTACCTCTCTGCTTGGGCCCGCCTCTACCTTTCATACCTATGGA AAATGCGTAACAATGATGAGAATTCTGTTCTTCATGTTCTTGAGATGTTTATTGTTGATCCATTCTTCTCGAGAATTGATTTTGCCCCTGAACTCTGGAA AGACCTGTTTCTTCCACAGATGAGCTCAATTGTTGGGTGGTATTCTGAAGCTAGACACAGACTTATGGTGGAAGTAATTCCTGATTCTTCTGATTTGTCA TTTACTGCTGACTTGGATCAGTTCTTCAATGAGTCTTTGATATATTCAATGAGGCCAGATCAGGTGGAAAAATTGCAAAACCTGGAGGAGCTTTACAGGG AATCCTTGGATGAAAATACGCGGCTTTTTGCTAAATACTACAAGGACTGCATGAATTCTGACTCAACAAGAAGCAAGAAGATGATTCCAATGTTGCCGAT AGCAGATCCACCAGTAACTCCTCTGCATGAGGTTAGCCGGTCGATTCCTGATTATGTGAAATTTGGTCCCATCTTGCCTAAAAGTGCTGGTTTCTCTCCA GTTCTTAGATCTAAACATGGTGTGAGAGCAGAAAGCAGATTGAGGATAATTTCAAACCTGTCACCTAATTTGGAAGAGTCTGATATATGTGATCATCAAG AGGCCATGCCAGAGGACAGAGAAAACGATTCTGATTGTGAGCGGAGTGATACTTATATTGATTCTGAAGATAAAAATCAGAAGTTAGTAACTCTTCGCGG CATAGAATCAACTGAGATTAAGGAAATTGGACTAAGCAAAAGGCTAGCTAAAGCAAAGAGCCAAAAGCATTCTCCCAAAATATTCTCTCCTATAAATTCC CCTAGAACTTCGCCAAAGATTAGTTCTCCTGATCCAGTTGTGCAGTCTAAAAAACAACCTACAACAATGTTACGGCTTCTGTCATGCCGTGCTACGGATT CTGTTAGTGCTACCTCGTTACCTGATTCTCCACGCTTGAGAAAAGATTACAGCAGTAGCTCACCAGACTCAGATGGTGAAGTGATAGGTCTGCTGAGAAG TGCCAGGAAGAACCGTAGCCGAACAAGGAGGATGAGTTATGACAATGTCGACAACCATATATTAGAGAATAGTTCACTTATTGAGAGTGATGAAGGAAGC CAGAGCTACATCTCACTTCCTACATCAGAGATGCTGACTCCCCGTTCAAGACCACCAAAAGATTTTGTTTGCCCTATCACAGGCCAACTTTTTAATGATC CAGTTACCCTTGAAACTGGCCAGACTTATGAGAGAAAAGCAATTCAAGAATGGGTGAAAAGAGGAAACACGACATGCCCTATTACTCGCCAACCTCTCTC TGCAAACTCACTGCCCAAAACAAATTATGTTTTGAAGAGACTCATAACATCTTGGAAAGAGCAGCATCCAGAGCTTGCTCAGGAATTTTCGTACTCTGAA ACACCAAGGAATTCATTCAGCCCCTCCTCCTTAAGAGAAAATTTGTTGGTGTCTACTGCATCCAGAACATTTTATTCTCCCAGTCATACTCATACTCGTA ACAGTACAGATAGTCACATGCATCAGAGGAGCAAAAGATTTGCCCGAGCAGAAGTATCCACATCACCAACCAGTGTAATTTCTCAAGCTACCATTGAAAC AATCATCAATGGGTTAAAACCTTATATTTCATCTCTCTGTACTTCAGAAAACTTAGAAGAATGTGAAGCAGCGGTGTCAGCAGTAGCCAAATTGTGGAAG GACTCAAAGGGTGATCCTGCAGTTCTTTCATATTTATCCGAGCCAACTATTGTAAATGGGATTGTAGAAATACTCTCTGCTTCTGTAAGCAGAGATGCTC TTAAAACTTCAGTTTACGTTCTCTCTGATTTAACATTTTCAGATGAAAGTGTCGGAGAGATTCTAACCAGTGTAGATTCTGATTTTGATTGCCTAGCTGC TTTGTTCAAAAATGGGCTTGCTGAGGCTGTTGTTCTGATATACCAGCTGAGGCCAGCTTTTGCTCAGCTTTCAGCTCACAACTTTATACCCTCACTTGTC CAGTCAATCCAGAGCAAAACTGAAGATTTAGATGATTTTCAATTTGCAATAGAGCCCAAGGACGCTGCTATAGCAGTGCTTGAACACTTGCTTACGGGTG GGGATGAAAACAGCCGGTCTGTCAATGCTTTTGATGTTATCTGTGCAAATGGAATTCCAGCGCTAGTCAAGTGTTTGGATAGAGTGGAAGGAAGGAAGTC AATTATTTCGATTCTTCTCTGTTGCATGCGTGCTGATAAAAGTTCCCGGAACTCGATAGCAAGTACAATCGAACTATCTCCTGTTCTTGAATTATTTCAC TCCGGGGATGATAGCGTGAGAGGCTTATGTATTGACTTCCTTTCAGAGCTAGTTCAGTTAAACAGGAGGACATTCTGTAATCAGATATTGCAGATAATTA AAGATGAAGGAGCATTTAGTACCATGCACACCTTTCTTGTGTATCTCCAAATGGCTCCCATGAGGCAGCAACCTTCCCTTGCCACTCTTCTTCTTCAGCT TGATCTCCTGGCTGAGCCGCGAAAGATGAGCATTTACAGGGAAGAAGCTGTAGAGGCTTTAATTGAAGCGCTGCACAGAAAGGACTTCTCTAATTCTCAG ATGATGGCTCTGGATGCTTTAGTTTCTATTTCTGCACGTCGGACTTCATCTGGGGGTACTTACATGGAAGCCTGGTTACTGAAGATTGCAGGATATGATC TACCTTACAATGCTTTGATGAAGGCAGAGAAGCTGAAGAAGAATGAAAATGATTTAGCAGAAAATTTTTTAGCTGAAACAGTGGAAGATGAAGAGAAAGC AGTAAGTTCTTGGGAGAAAAGAGTGGCATTTGTTCTTTGCAATCATGAAAAGGGCTCTATCTTTAAAGCTTTAGAGGAGTGCTTCAAGAGTAATTCCTTA GAGACGGCAAAATCATGCCTTGTCATCTCCACATGGCTCATATACATGCTTTCAGTTCTTCCTGATACTGGTGTAAAAAGTGCGGCTCGTAAATCCTTGC TTGATGAATTTATAAATGTCCTCCAATCAACTAGAAACATGGAAGAGAAGATTTTGGCAACCCTTGCATTAAGAACCTTCGTAAGTGACCCAGCTGCACT TGAAGAGCTCGGAAAGTATGCTAAATGCATCTACAGCACCTTGAGAAAGCTGAAGAAAAGTTCACCAGTGATCACTGATGTACTGAAATCCTTGATGAAT TTGTCATCTGTCAATGCAACAGAGTTGTGGAACTGCACCGAAGTGGTTGAGGTAGAATCATGCGCCAATGGTGAAGTGCTGTCTCTGCTTCATTTTAAAG GTCGTGTTATTAGCAGCCATTCCGACGGAACCATCAAGGTGTGGGATGCTGGAAAGAGTGTTCTAAGGTTGATTCAAGAAGTTCGTGAACATACAAAAGC TGTCACATGCCTCTATATTTCATCTTCAGGAGACAAATTGTACAGTGGTTCCTTGGACAAAACCGTTCGGGTTTGGGCAATTAAACCTGAAGAAATTCAT TGTATTCAAGTTCATGATGTGAAAGAGGCAGTATACGAGTTGACAGCTAATGGTAAAGTTGCATGCTTTGTTTCTCAAGGAGCAGGAGTTAAGGTATACA GCTGGTCAGGTGTTCCAAAGCATATAAACTTCAACAAAACGGTGAAGTGCCTTGCTATGACAGGGGATACATTATATTGTGGCGTCTCCGGTTACAGTAT CCAGGAGGTGGATTTGATCAAATTCACATCAACTACATTCTACTCTGGAACAAGAAAATTGTTGGGGAAACAAAGTATTTATTCCCTGCAAATCCAAGAT GGTCTTCTGTTTGCTGGTGGTTCAGCGGTTGATGGAACAGCAGGGAAAGTATTTTCTCACTCGAGCAAAGCTGTAACAGGATCCTTCTCAACTGGATTCG ACATTCAGCGAATTGCTGTCAACAGCGACTTCATATTCACAGCCACGAAAAGTGGGATCATTGAGGTTTGGTTAAAGGAAAGAGTTACAAGAGTTGCTTC GATCAAAGTAGGAAGCGGGTGGCACGCCAGAATTACATGCTTAACATCAGATATGGACGGTGCAATGCTTTATGCTGGCACTTCTGATGGCAAGATACAG GCTTGGTCATTGGACTAG
AA sequence Show only first row Show all	>Potri.005G240100.4 pacid=42803554 polypeptide=Potri.005G240100.4.p locus=Potri.005G240100 ID=Potri.005G240100.4.v4.1 annot-version=v4.1 MEGSYRFAMDQKDIVRFLITTVGSFTQDRLINKEQRTQHKEQCAERLAAEDGSCYKDTEVRYSDQAVLANLDWGIEALEEAIDTSNMETKLARLDYAEKM LQVCALLNSDQRTAGVPNFYLSAWARLYLSYLWKMRNNDENSVLHVLEMFIVDPFFSRIDFAPELWKDLFLPQMSSIVGWYSEARHRLMVEVIPDSSDLS FTADLDQFFNESLIYSMRPDQVEKLQNLEELYRESLDENTRLFAKYYKDCMNSDSTRSKKMIPMLPIADPPVTPLHEVSRSIPDYVKFGPILPKSAGFSP VLRSKHGVRAESRLRIISNLSPNLEESDICDHQEAMPEDRENDSDCERSDTYIDSEDKNQKLVTLRGIESTEIKEIGLSKRLAKAKSQKHSPKIFSPINS PRTSPKISSPDPVVQSKKQPTTMLRLLSCRATDSVSATSLPDSPRLRKDYSSSSPDSDGEVIGLLRSARKNRSRTRRMSYDNVDNHILENSSLIESDEGS QSYISLPTSEMLTPRSRPPKDFVCPITGQLFNDPVTLETGQTYERKAIQEWVKRGNTTCPITRQPLSANSLPKTNYVLKRLITSWKEQHPELAQEFSYSE TPRNSFSPSSLRENLLVSTASRTFYSPSHTHTRNSTDSHMHQRSKRFARAEVSTSPTSVISQATIETIINGLKPYISSLCTSENLEECEAAVSAVAKLWK DSKGDPAVLSYLSEPTIVNGIVEILSASVSRDALKTSVYVLSDLTFSDESVGEILTSVDSDFDCLAALFKNGLAEAVVLIYQLRPAFAQLSAHNFIPSLV QSIQSKTEDLDDFQFAIEPKDAAIAVLEHLLTGGDENSRSVNAFDVICANGIPALVKCLDRVEGRKSIISILLCCMRADKSSRNSIASTIELSPVLELFH SGDDSVRGLCIDFLSELVQLNRRTFCNQILQIIKDEGAFSTMHTFLVYLQMAPMRQQPSLATLLLQLDLLAEPRKMSIYREEAVEALIEALHRKDFSNSQ MMALDALVSISARRTSSGGTYMEAWLLKIAGYDLPYNALMKAEKLKKNENDLAENFLAETVEDEEKAVSSWEKRVAFVLCNHEKGSIFKALEECFKSNSL ETAKSCLVISTWLIYMLSVLPDTGVKSAARKSLLDEFINVLQSTRNMEEKILATLALRTFVSDPAALEELGKYAKCIYSTLRKLKKSSPVITDVLKSLMN LSSVNATELWNCTEVVEVESCANGEVLSLLHFKGRVISSHSDGTIKVWDAGKSVLRLIQEVREHTKAVTCLYISSSGDKLYSGSLDKTVRVWAIKPEEIH CIQVHDVKEAVYELTANGKVACFVSQGAGVKVYSWSGVPKHINFNKTVKCLAMTGDTLYCGVSGYSIQEVDLIKFTSTTFYSGTRKLLGKQSIYSLQIQD GLLFAGGSAVDGTAGKVFSHSSKAVTGSFSTGFDIQRIAVNSDFIFTATKSGIIEVWLKERVTRVASIKVGSGWHARITCLTSDMDGAMLYAGTSDGKIQ AWSLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06880			Transducin/WD40 repeat-like su...		Potri.005G240100 [exp]	0	1
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G041800 [exp]	3.60	0.9761
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Potri.011G010000 [exp]	6.32	0.9760
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Potri.010G003000 [exp]	6.48	0.9754
AT2G01900			DNAse I-like superfamily prote...		Potri.012G041600 [exp]	8.83	0.9690
AT2G23770			protein kinase family protein ...		Potri.009G010300 [exp]	8.94	0.9711
AT3G14470			NB-ARC domain-containing disea...		Potri.004G196100 [exp]	10.95	0.9662
AT4G00910			Aluminium activated malate tra...		Potri.002G174600 [exp]	10.95	0.9613
AT2G01900			DNAse I-like superfamily prote...		Potri.015G032200 [exp]	12.24	0.9708
AT5G53190		SWEET3, AtSWEET...	Nodulin MtN3 family protein (....		Potri.015G021900 [exp]	13.07	0.9614
AT1G08930		ERD6	EARLY RESPONSE TO DEHYDRATION ...		Potri.013G027700 [exp]	14.28	0.9632

Compare expression of checked genes

Potri.005G240100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.