Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75800 399 / 6e-140 Pathogenesis-related thaumatin superfamily protein (.1) AT1G20030 379 / 2e-132 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G36010 327 / 3e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G38670 323 / 9e-111 Pathogenesis-related thaumatin superfamily protein (.1.2.3) AT2G17860 305 / 4e-104 Pathogenesis-related thaumatin superfamily protein (.1) AT4G38660 296 / 1e-99 Pathogenesis-related thaumatin superfamily protein (.1.2) AT5G38280 301 / 1e-97 PR5K PR5-like receptor kinase (.1) AT4G24180 281 / 9e-95 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT1G19320 260 / 1e-86 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75040 257 / 2e-85 PR-5, PR5 pathogenesis-related gene 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G020500 [exp] 565 / 0 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G112700 [exp] 371 / 1e-129 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.004G014574 [exp] 350 / 1e-121 AT1G75800 294 / 8e-100 Pathogenesis-related thaumatin superfamily protein (.1) Potri.004G014512 [exp] 349 / 4e-116 AT5G38280 469 / 1e-157 PR5-like receptor kinase (.1) Potri.004G014700 [exp] 348 / 8e-116 AT5G38280 457 / 3e-153 PR5-like receptor kinase (.1) Potri.009G132200 [exp] 334 / 7e-115 AT4G38670 410 / 2e-145 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Potri.011G003900 [exp] 334 / 4e-110 AT5G38280 413 / 1e-135 PR5-like receptor kinase (.1) Potri.005G241000 [exp] 301 / 2e-101 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.009G132500 [exp] 299 / 1e-100 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017265 [exp] 427 / 2e-151 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10034534 [exp] 408 / 6e-144 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10033136 [exp] 401 / 4e-141 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028448 [exp] 319 / 4e-109 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 306 / 8e-104 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10013561 [exp] 296 / 1e-99 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017266 [exp] 293 / 1e-98 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10028447 [exp] 286 / 1e-95 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041899 [exp] 285 / 3e-95 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10025055 [exp] 278 / 2e-93 AT4G38660 359 / 6e-125 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF00314 [poplar] [flax] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Potri.005G240900.1 pacid=42803313 polypeptide=Potri.005G240900.1.p locus=Potri.005G240900 ID=Potri.005G240900.1.v4.1 annot-version=v4.1 ATGTCTCAGCTAACATTACTTATCCCTCTATCATCCTTCTTCATTTCCCATTTCTTCATTCAAGCTGTTGTTTCAACAACGTTTACATTAACTAACAAAT GTGACTACACAGTATGGCCGGGAAGTCTTTCCAACGCAGACGCACCAGCTCTCTCCACAACTGGCTTTGCCCTTCAAAATGGTGAGTCAAAAACCATCAC AGCACCAGCTTCATGGGGTGGACGTTTCTGGGGCCGAACATATTGCTCTCAAGACTCCACAGGAAAATTCTCTTGTGTTACAGGTGATTGTGGCTCAGGA AAACTAGAATGTTCAGGCACGGGTGCAGCTCCTCCAGCTACGTTAGCAGAGTTCAAGCTTGACGGCTATGGAGGGATGGATTATTTTGATGTGAGTCTTG TTGATGGGTACAACTTGCCATTGCTTGTTGTCCCTCAAGGAGGTTCTGGTCAGAATTGTACAAGCACAGGATGCGTTGTGGATTTGAACGACTCGTGCCC TTCAGAGCTTAAGGTTACTAGTACGGAAGGGGAAAGCGTGGCCTGTAAAAGCGCTTGTGAAGCTTTTGGGTCTCCACAGTATTGTTGCAATGGAGCATAC AGTACACCTGATACCTGCAGGCCTTCTACGTATTCTGAGATTTTTAAGAACGCTTGTCCACGCGCTTACAGCTATGCTTACGATGATAAGACTAGTACCT TCACTTGTGCCGCCGCTGATTACCAAATTACCTTCTGCCCCTCCCCTAACACCAGCCAAAAAGCATCACAAGGGCAGAACACTGAGAATACAAGCACAAA CAGCTACACACCACTCGTCAACAGTACAATGGTGTATGAAGGTGCGTTGAACCAGAATGGAGCATCGCCATCTATGAACAGCAAGGTCTTAGGATCACAT GTCATTGCGGGAATTGTCAGCTTAACAGTAGCCATTTGGCAGTTGGGATAG
AA sequence Show only first row Show all	>Potri.005G240900.1 pacid=42803313 polypeptide=Potri.005G240900.1.p locus=Potri.005G240900 ID=Potri.005G240900.1.v4.1 annot-version=v4.1 MSQLTLLIPLSSFFISHFFIQAVVSTTFTLTNKCDYTVWPGSLSNADAPALSTTGFALQNGESKTITAPASWGGRFWGRTYCSQDSTGKFSCVTGDCGSG KLECSGTGAAPPATLAEFKLDGYGGMDYFDVSLVDGYNLPLLVVPQGGSGQNCTSTGCVVDLNDSCPSELKVTSTEGESVACKSACEAFGSPQYCCNGAY STPDTCRPSTYSEIFKNACPRAYSYAYDDKTSTFTCAAADYQITFCPSPNTSQKASQGQNTENTSTNSYTPLVNSTMVYEGALNQNGASPSMNSKVLGSH VIAGIVSLTVAIWQLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75800			Pathogenesis-related thaumatin...		Potri.005G240900 [exp]	0	1
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Potri.014G168100 [exp]	2.64	0.7901
AT5G62170			unknown protein		Potri.012G132900 [exp]	3.46	0.7526
AT1G16670			Protein kinase superfamily pro...		Potri.010G221400 [exp]	3.46	0.7630
AT1G57820		ORTH2, VIM1	VARIANT IN METHYLATION 1, ORTH...		Potri.003G162400 [exp]	3.74	0.7786
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.008G139500 [exp]	4.24	0.7422	Pt-ANN5.2
AT1G07900	AS2	LBD1	LOB domain-containing protein ...		Potri.010G217700 [exp]	8.00	0.6879	LBD11.1
AT3G59480			pfkB-like carbohydrate kinase ...		Potri.007G129700 [exp]	11.40	0.7320
AT4G23650		CDPK6, CPK3	Calcium dependent protein kina...		Potri.003G134000 [exp]	12.32	0.6498
AT3G60450			Phosphoglycerate mutase family...		Potri.002G141000 [exp]	14.07	0.6871
AT3G51930			Transducin/WD40 repeat-like su...		Potri.001G022900 [exp]	15.96	0.7549

Compare expression of checked genes

Potri.005G240900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.