Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24190 1226 / 0 AtHsp90-7, HSP90.7, SHD SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2) AT5G52640 637 / 0 AtHsp90-1, ATHS83, ATHSP90.1, HSP83, HSP81-1 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) AT2G04030 562 / 0 Hsp88.1, AtHsp90.5, HSP90.5, CR88, EMB1956 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) AT5G56000 393 / 1e-125 Hsp81.4, AtHsp90.4 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) AT5G56030 385 / 2e-122 AtHsp90.2, HSP90.2, ERD8, HSP81-2 HEAT SHOCK PROTEIN 90.2, EARLY-RESPONSIVE TO DEHYDRATION 8, HEAT SHOCK PROTEIN 90.2, heat shock protein 81-2 (.1.2) AT5G56010 384 / 2e-122 AtHsp90-3, HSP81-3 HEAT SHOCK PROTEIN 90-3, heat shock protein 81-3 (.1) AT3G07770 366 / 4e-114 Hsp89.1, AtHsp90-6 HEAT SHOCK PROTEIN 90-6, HEAT SHOCK PROTEIN 89.1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G146600 [exp] 630 / 0 AT5G52640 1174 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Potri.010G136800 [exp] 573 / 0 AT2G04030 1232 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) Potri.004G073600 [exp] 558 / 0 AT5G52640 1021 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Potri.001G466000 [exp] 393 / 9e-126 AT5G56000 1132 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.016G003400 [exp] 382 / 2e-121 AT5G56000 1148 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.006G002800 [exp] 381 / 3e-121 AT5G56000 1115 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.001G286700 [exp] 381 / 5e-121 AT5G56000 1118 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.008G112700 [exp] 381 / 5e-120 AT2G04030 1201 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) Potri.014G164900 [exp] 362 / 8e-113 AT3G07770 1182 / 0.0 HEAT SHOCK PROTEIN 90-6, HEAT SHOCK PROTEIN 89.1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034535 [exp] 1254 / 0 AT4G24190 1225 / 0.0 SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2) Lus10033135 [exp] 1248 / 0 AT4G24190 1224 / 0.0 SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2) Lus10027517 [exp] 641 / 0 AT5G52640 1230 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10027303 [exp] 641 / 0 AT5G52640 1204 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10039281 [exp] 639 / 0 AT5G52640 1226 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10039008 [exp] 633 / 0 AT5G52640 1204 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10038845 [exp] 620 / 0 AT5G52640 1175 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10014964 [exp] 619 / 0 AT5G52640 1177 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10019206 [exp] 370 / 6e-116 AT2G04030 1283 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) Lus10036843 [exp] 370 / 6e-116 AT2G04030 1278 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00183 [poplar] [flax] HSP90 Hsp90 protein CL0025 [poplar] [flax] His_Kinase_A PF02518 [poplar] [flax] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Potri.005G241100.1 pacid=42805646 polypeptide=Potri.005G241100.1.p locus=Potri.005G241100 ID=Potri.005G241100.1.v4.1 annot-version=v4.1 ATGAGGAAGTGGACAGTCCCTTCCGTTTTGCTACTACTGTGCCTTCTTTCTCTCATTTCAGATCAAGGTCAGAAGTTACACGCAAAAGCAGAGGATGATT CTGATTCGCTTGTAGATCCTCCAAAAGTAGAGGAGAAACTCGGTGCCGTTCCAAACGGACTATCAACGGATTCTGATGTCGTCAAGAGAGAGTCGGAGTC TATTTCGAAGAGAACACTTCGCAACACTGCGGAGAAATTCGAGTTCCAAGCTGAGGTGTCTCGGCTTATGGATATTATTATCAACTCTCTCTACAGTAAC AAAGATATTTTCCTTAGAGAGTTGATTTCCAATGCATCTGATGCGCTTGATAAAATTAGATTCCTCTCTCTCACGGATAAAGAGGTTTTGGGCGAAGGCG ACAATGCCAAGCTTGATATTCAGATTAAGTTAGATAAAGAAAAGAAAATTCTATCAATTCGCGATAGAGGTATTGGCATGACAAAGGAGGATTTGATCAA GAATTTGGGTACCATAGCTAAGTCAGGAACTTCAGCATTTGTGGAGAAAATGCAGACAAGTGGAGACCTAAATTTAATTGGACAGTTTGGAGTTGGGTTT TACTCTGTATATCTTGTTGCTGACTATGTTGAAGTCATTAGCAAGCACAATGAAGACAAACAGTATGTATGGGAATCAAAGGCCGACGGAGCATTTGCAA TCTCTGAGGATACCTGGAATGAGCCTCTGGGACGTGGAACTGAGATTAGATTGCATCTCAGGGAAGAAGCTGGAGAGTACTTGGAGGAGAGTAAATTGAA AGATTTGGTGAAGAAATATTCTGAATTCATCAACTTCCCAATCTATTTGTGGGCAAGTAAAGAGGTTGACGTGGAGGTTCCTGCTGATGAAGACGAGTCT AGCGATGAAGATGAAACAACTGCTGAAAGCAGCTCTTCTGATGATGGAGATTCTGAGAAAAGTGAAGATGAGGACGCAGAGGATAAACCAAAAACCAAAA AAATTAAGGAGACTACTTATGAGTGGGAACTTTTGAATGATGTTAAGGCTATATGGTTGAGAAATCCAAAGGAGGTGACAGAAGAAGAGTACACAAAATT CTACCACTCTCTAGCAAAGGATCTTGGTGATGAGAAGCCACTGGCATGGAGTCACTTCACTGCTGAAGGCGATGTTGAATTCAAGGCTGTTTTGTTTGTT CCACCAAAGGCTCCTCATGATCTATATGAGAGTTATTACAACACTAATAAAGCCAACCTGAAGCTGTATGTTAGACGAGTCTTCATCTCAGATGAATTTG ATGAGCTTTTGCCAAAATATCTGAACTTTTTGATGGGTCTCGTTGATTCTGATACTTTACCGCTCAATGTTTCACGAGAAATGCTTCAACAACACAGCAG CTTAAAAACAATCAAGAAGAAACTTATCAGAAAGGCACTTGATATGATCCGTAAAATTGCTGATGAGGATCCTGATGAGGCAAATGACAAAGACAAGAAA GATGTTGAGAATTCCAGTGATGATGAGAAGAAAGGTCAATATGCAAAATTTTGGAATGAGTTTGGCAAGTCTATCAAACTCGGCATTATTGAGGATTCAG TTAACAGAAATCGCTTGGCAAAACTTCTCAGATTTGAAACCACCAAGTCGGATGGTAAATTGACATCACTTGATCAGTACATATCAAGAATGAAATCTGG GCAAAAGGATATCTTCTACATAACTGGACCGAACAAGGAGCAAGTGGAAAAATCTCCTTTCCTTGAGAGGCTGAAGAAGAAGGGTTATGAGGTTATTTAC TTCACAGATCCAGTTGATGAATATTTGATGCAATATCTGATGGATTATGAAGACCAGAAATTCCAGAATGTTTCCAAGGAGGGTCTGAAACTAGGGAAAG ACTCAAAAGCTAAGGAGCTAAAGGAGTCATTCAAGGAGCTAACCAAGTGGTGGAAGGGTGCTCTTGCCAGTGAGAACGTTGATGATGTGAAAATTAGCAA TCGTTTGGCTGACACACCTTGTATTGTTGTGACATCAAAATATGGATGGAGCGCAAATATGGAAAGGATAATGCAGGCCCAAACTTTGTCAGATGCAAAC AAGCAAGCATATATGCGTGGCAAGAGGGTGCTCGAGATTAATCCAAGGCATCCAATCATCAAGGAACTCCGTGAGAGAGTTGTAAAGGACCCTGAGGATG ATAGTGTTAAGCAAACCGCCCACCTCATGTACCAAACAGCGCTCATGGAGAGTGGCTTCATACTCAATGATCCCAAAGATTTTGCCTCTCGTATTTACAG CTCCGTGAAATCTAGCCTAAGCATCAGTCCTGATGCTATCATCGAAGAGGAAGATGATGTAGAAGAAGTTGAAGTTGAAGCCGAAACAAAAGAAGCCACT TCCAGCAGTGAAGCTGAACCCACTAGAGATGACGAGCTTACGGAACCCTCTGTTGTGAAGGATGAGTTGTAG
AA sequence Show only first row Show all	>Potri.005G241100.1 pacid=42805646 polypeptide=Potri.005G241100.1.p locus=Potri.005G241100 ID=Potri.005G241100.1.v4.1 annot-version=v4.1 MRKWTVPSVLLLLCLLSLISDQGQKLHAKAEDDSDSLVDPPKVEEKLGAVPNGLSTDSDVVKRESESISKRTLRNTAEKFEFQAEVSRLMDIIINSLYSN KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNAKLDIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGF YSVYLVADYVEVISKHNEDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLREEAGEYLEESKLKDLVKKYSEFINFPIYLWASKEVDVEVPADEDES SDEDETTAESSSSDDGDSEKSEDEDAEDKPKTKKIKETTYEWELLNDVKAIWLRNPKEVTEEEYTKFYHSLAKDLGDEKPLAWSHFTAEGDVEFKAVLFV PPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLMGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIADEDPDEANDKDKK DVENSSDDEKKGQYAKFWNEFGKSIKLGIIEDSVNRNRLAKLLRFETTKSDGKLTSLDQYISRMKSGQKDIFYITGPNKEQVEKSPFLERLKKKGYEVIY FTDPVDEYLMQYLMDYEDQKFQNVSKEGLKLGKDSKAKELKESFKELTKWWKGALASENVDDVKISNRLADTPCIVVTSKYGWSANMERIMQAQTLSDAN KQAYMRGKRVLEINPRHPIIKELRERVVKDPEDDSVKQTAHLMYQTALMESGFILNDPKDFASRIYSSVKSSLSISPDAIIEEEDDVEEVEVEAETKEAT SSSEAEPTRDDELTEPSVVKDEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Potri.005G241100 [exp]	0	1
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Potri.001G087500 [exp]	1.00	0.9246	Pt-BIP.2
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Potri.003G143600 [exp]	2.44	0.9170	BIP.1
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.015G109200 [exp]	3.00	0.9061	CNX1.1
AT4G16660			heat shock protein 70 (Hsp 70)...		Potri.016G019800 [exp]	3.16	0.8791
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Potri.016G088600 [exp]	3.46	0.8979
AT1G34130		STT3B	staurosporin and temperature s...		Potri.012G036300 [exp]	3.87	0.7905	Pt-STT3.2
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.012G111100 [exp]	4.00	0.8632	CNX1.2
AT4G16660			heat shock protein 70 (Hsp 70)...		Potri.006G022100 [exp]	4.24	0.8755
AT4G10040		CYTC-2	cytochrome c-2 (.1)		Potri.013G101601 [exp]	4.24	0.8492
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Potri.002G198000 [exp]	5.29	0.8690

Compare expression of checked genes

Potri.005G241100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.