Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16630 829 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT1G16280 244 / 2e-72 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) AT5G60990 238 / 9e-71 DEA(D/H)-box RNA helicase family protein (.1) AT1G55150 200 / 3e-56 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 202 / 5e-56 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G47330 202 / 4e-55 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58570 198 / 2e-54 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G31970 196 / 2e-54 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT4G33370 194 / 8e-54 DEA(D/H)-box RNA helicase family protein (.1) AT2G42520 196 / 1e-53 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G249100 [exp] 243 / 2e-72 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.007G068800 [exp] 243 / 2e-72 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G013900 [exp] 240 / 2e-71 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.008G084700 [exp] 240 / 6e-71 AT1G16280 616 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Potri.019G130900 [exp] 214 / 1e-60 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.013G158000 [exp] 214 / 2e-60 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G185900 [exp] 209 / 2e-57 AT1G77030 1106 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Potri.003G038300 [exp] 202 / 6e-57 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G063600 [exp] 206 / 2e-56 AT3G16840 782 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042754 [exp] 918 / 0 AT1G16280 983 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10029596 [exp] 254 / 6e-75 AT1G16280 674 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10006326 [exp] 252 / 2e-74 AT1G16280 673 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10031761 [exp] 248 / 2e-74 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10031182 [exp] 248 / 4e-74 AT5G60990 674 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10030075 [exp] 214 / 2e-60 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018941 [exp] 211 / 7e-58 AT1G77030 1043 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Lus10028644 [exp] 209 / 5e-57 AT1G77030 1057 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Lus10015187 [exp] 202 / 2e-55 AT2G33730 1083 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016207 [exp] 201 / 2e-55 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G241300.1 pacid=42804500 polypeptide=Potri.005G241300.1.p locus=Potri.005G241300 ID=Potri.005G241300.1.v4.1 annot-version=v4.1 ATGGCTCCAAGCTTCGTATTTGAGCCTCCTAGCGACGAAGAAGTTGAATTGTCAGAAGCAGAAGAACTGGAAGACGAGGAAGAAGAAGCGGAAGGAGAAG GAGAAGAAGAGAAACCATCAAAACGGCGGCAGAAGCAGTCGCCTTGGGACTTTGCTTCCTACTCCGAATCCGTCGCCGAAGAACACGCTCGTCGAAGCAC AACTTCCATCGATGACAAAATCTCAAGAGCTCGCCAACAACACTCCACTCCTTTAACTGAACACGCCGACGATGCTAGTTCCTCGGATTCCGAACCTGAC AAACAAGAAGTGTATAAGGGGGAAGATGACGAGGGTGATGAGGATACTAATGTAGAGGAAAGGAAGTCATTTTTTGCGCCTTCAGAAGGAACTTCTTTCC ATGCCAATTCGTTTATGGAGCTTAATCTATCTCGGCCACTGCTTCGAGCTTGCGAGGCTTTAGGTTATACTAAGCCTACTCCAATTCAGGCGGCTTGTAT ACCGTTGGCCCTCACCGGGCGTGATATTTGCGGGAGTGCTATTACTGGTTCAGGGAAGACAGCAGCTTTCGCCTTACCTACTTTGGAGAGATTACTGTTT CGTCCAAAACGTATTCTAGCAATAAGAGTCCTTATTCTAACTCCTACCAGAGAATTGGCGGTTCAGGTTCACAGTATGATTGAGAAAATTGCGCAATTTA CGGATATAAGATGTTGCTTGGTTGTTGGAGGGCTTTCTACAAAGGTGCAAGAAGCTTCCTTGAGATCAATGCCAGATATTGTTGTAGCTACTCCAGGGCG CATGATAGATCATTTACGCAATTCTATGTCAGTTGATTTGGATGATCTAGCAGTTTTAATCCTTGATGAAGCAGACCGACTTCTGGAGCTTGGATTTAAT GCTGAAATTCACGAGCTGGTTCGACTTTGTCCCAAAAGGAGGCAGACCATGCTATTTTCAGCTACTATGACTGAAGAAGTTGATATGCTTATAAAGCTTT CTCTAACCAAACCACTGCGTCTCTCTGCTGATCCATCTGCAAAACGACCAGCAGCATTGACTGAGGAGGTGCTTAGACTACGCAGGATGCGTGAGGTCAA CCAGGAGGCAGTCCTCCTTGCATTGTGCTCAAAAACTTTTACATCTAAAGCGATCATCTTCAGTGGAACCAAGCAAGCTGCACATAGGTTGAAGATTTTG TTTGGATTAGCGGGTTTTAAAGCTGCTGAGCTTCATGGAAATCTTACACAGGCCCAGCGTCTTGATGCTTTGGAACTTTTCAGGAAGCAGGAAGTCGACT TTTTGATTGCAACGGATGTAGCTGCTCGAGGACTTGATATTATTGGTGTTCAGACAGTTATCAATTATGCATGTCCCCGTGACCTTACTAGTTACATTCA CAGAGTGGGTCGTACTGCGAGAGCTGGTAGAGAAGGATATGCAGTTACATTTGTGACAGATAATGATCGATCCCTTTTGAAAGCCATTGCAAAGAGAGCT GGTTCAAAGTTGAGGAGCCGTATTGTTGCAGAGCAATCAATTATTAAGTGGTCTCAGATGATTGAGAACATGGAAAATCAAGTGGCTGATGTTCTTCAAC AAGAGAGGGAAGAGAGAGCAATAAGAAAAGCTGAAATGGAAGCAACCAAGGCAGAAAATATGATCGCACACAAGGATGAAATCTTTTCACGTCCCAAAAG GACTTGGTTTGTAACAGAGAGAGAGAAAATGCTCGCAGCAAAAGCAGCAAAGCAGTCATCAGTTGAAAAAGAAAAAGGTTCTGGAAATGAGGTGATGAGT GCCCAACAAGCCGAAGACCTTAAAATGAAGGAAAAGAGGAAGCGAGAGCGTGAGAAAAATTTACCCCGTAAAAAGCGTCGAAAATTACAAGCAGCCAGAG AGATGCTAGAGGATGAAGATTTGACAGAGAAATCAGAAGGCAGTGGAAAAAATAAGAAAGAAAAGACTGGACTATCACTAGTCGATCTGGGTTACCGGCG GGCAAAAGCAGCGAAGGCTGTGAAGAAGGCAATGGATGCGGGCAAGTTTGTGCAGAAGAAGGGTAGTAAGAAATCAAAGCAGCCTCCTGAAAGAACTCAA TCAAGGACAGAAGAAATGCAGGAGCTATTCCAGAGCGATATGAGTGAGAAAAAGCAGAAGAGAAGAAGTAGCGGAACAGGAAACAAGAAGTCCAAGAATT CATTCAAAAGCAAATCAAGGTATAAGCGCAAGTAG
AA sequence Show only first row Show all	>Potri.005G241300.1 pacid=42804500 polypeptide=Potri.005G241300.1.p locus=Potri.005G241300 ID=Potri.005G241300.1.v4.1 annot-version=v4.1 MAPSFVFEPPSDEEVELSEAEELEDEEEEAEGEGEEEKPSKRRQKQSPWDFASYSESVAEEHARRSTTSIDDKISRARQQHSTPLTEHADDASSSDSEPD KQEVYKGEDDEGDEDTNVEERKSFFAPSEGTSFHANSFMELNLSRPLLRACEALGYTKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLF RPKRILAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKVQEASLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFN AEIHELVRLCPKRRQTMLFSATMTEEVDMLIKLSLTKPLRLSADPSAKRPAALTEEVLRLRRMREVNQEAVLLALCSKTFTSKAIIFSGTKQAAHRLKIL FGLAGFKAAELHGNLTQAQRLDALELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYIHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA GSKLRSRIVAEQSIIKWSQMIENMENQVADVLQQEREERAIRKAEMEATKAENMIAHKDEIFSRPKRTWFVTEREKMLAAKAAKQSSVEKEKGSGNEVMS AQQAEDLKMKEKRKREREKNLPRKKRRKLQAAREMLEDEDLTEKSEGSGKNKKEKTGLSLVDLGYRRAKAAKAVKKAMDAGKFVQKKGSKKSKQPPERTQ SRTEEMQELFQSDMSEKKQKRRSSGTGNKKSKNSFKSKSRYKRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16630			DEA(D/H)-box RNA helicase fami...		Potri.005G241300 [exp]	0	1
AT1G79150			binding (.1)		Potri.005G096900 [exp]	1.41	0.9135
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Potri.009G120900 [exp]	2.64	0.8785
AT2G18220			Noc2p family (.1)		Potri.001G012800 [exp]	3.74	0.9044
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Potri.001G030200 [exp]	4.47	0.8842
AT5G39900			Small GTP-binding protein (.1)		Potri.017G079800 [exp]	4.69	0.8412
AT5G11240			transducin family protein / WD...		Potri.010G005400 [exp]	5.65	0.8784
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Potri.006G055300 [exp]	5.74	0.8859
AT1G29940		NRPA2	nuclear RNA polymerase A2 (.1)		Potri.001G030750 [exp]	6.00	0.8854
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.010G145150 [exp]	6.32	0.8704
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Potri.003G060500 [exp]	7.93	0.8723

Compare expression of checked genes

Potri.005G241300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.