Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24200 417 / 1e-129 Transcription elongation factor (TFIIS) family protein (.1) AT3G48050 66 / 2e-10 SUO 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) AT3G48060 64 / 7e-10 BAH domain ;TFIIS helical bundle-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G020000 [exp] 1490 / 0 AT4G24200 254 / 2e-70 Transcription elongation factor (TFIIS) family protein (.1) Potri.015G072800 [exp] 77 / 7e-14 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.012G077700 [exp] 76 / 2e-13 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.012G077500 [exp] 75 / 2e-13 AT3G48050 1375 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.015G072900 [exp] 70 / 9e-12 AT3G48050 1311 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028515 [exp] 687 / 0 AT4G24200 197 / 7e-52 Transcription elongation factor (TFIIS) family protein (.1) Lus10009128 [exp] 687 / 0 AT4G24200 193 / 2e-50 Transcription elongation factor (TFIIS) family protein (.1) Lus10033586 [exp] 593 / 0 AT4G24200 147 / 5e-36 Transcription elongation factor (TFIIS) family protein (.1) Lus10017630 [exp] 553 / 0 AT4G24200 149 / 2e-36 Transcription elongation factor (TFIIS) family protein (.1) Lus10042137 [exp] 80 / 8e-15 AT3G48050 764 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Lus10033410 [exp] 75 / 3e-13 AT3G48060 726 / 0.0 BAH domain ;TFIIS helical bundle-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08711 [poplar] [flax] Med26 TFIIS helical bundle-like domain
Representative CDS sequence Show only first row Show all	>Potri.005G241400.2 pacid=42803524 polypeptide=Potri.005G241400.2.p locus=Potri.005G241400 ID=Potri.005G241400.2.v4.1 annot-version=v4.1 ATGACTCTCGAGGATTTCTTTACACTGACTGAGATGAAGGATGGGCTCACAGCCCCATCACGAGTCCATGAGTTGGTTGCTGTAATGAAGAAGGAGAAAT TTACTGTTGTGAAAAACATTGGAGATGCAACCAGGCAATGGGCAGCTGTTGCAAGCACAGTTGCTGCTACAGAGAATAAAGATTGTCTTGATCTTTTTAT TAACTTAGATGGGCTGTTGTTTTTTGATAGATGGTTAAAGCTCGCTCAGAAGTTCAGTAATGAAACAGGTGAAGGCTCTGTAGAAGAGTCAATTACTGCA TTGTTAAGAGCACTGGAAAAGCTGCAAATAGACAAGGAGAGGTCTATTACTTCAGGGGTCTGGGACACTGTCAATAATTTACTTGACCACAATAGTTCTC GGGTTCAGGATAGGGCAAGGGCACTGTTCAATAGCTGGAAGCCTGGTGAGGTCAGTGATGCAATTCACCATGATGTTCAGAGCGTTGGGGCATTTGATAA TGTCGGAATGAAAGACAGTAACACTGGCAAAACTGAATGTGTTGTTCTTGATGTTCCCCTTTCAAACAGAAGGGCTGATGTAGAAAACAATGCTGCAGAA CAAACCGGGGATGAAAGTTTGCAATCAAGAAGCTCAAATTGTCTTCCAGCAGAAAGCACCCAGGATGTACAAATTCAAACAAATGATTGTGATCATCAAA ATTTAGACCATAGAAATTTGGAGAATAGAACACAAGATCCTCTCACCACCTCTGTGGATAGATCATTAGATCCCCGTTCCCCCCCTGTTGTGTCAACATC TGACCAGGAAAGCCCACCATTCAAAGAAAAATCCCAAGTGAGTAGTACTGTAGAAGGGGCTGCTTCTACTGAGACACATAGTTTAGCAGTTCCAAAGGGA CACACAGCTGAACCAGACTCGGAAGCTCCAAAGATGCTTACTGATAAATCAGCTGCCTCTAGTAACGTGGAAGCTGCAGTTATTTCCTTGAGTAATGTTG CTGGCAATGCTCAGGAAATTGTGACAGGATCCGCTTTGCAAAATAATATTGACACCAAAGAGGATAATTGCCGTACAAGTGCATCTGGTGATGTGGCAGC ACCTTTATCTACATCAAAGGTTGGGACAGATGAAGTGGAGAATAGAAATCAATGTCAAACACCTATGTTTAATTCTACTGCCAAAGATGGTGAATTTTCT CCTGACCCTTCACAACACTTGTCTGGCAACAAGAGTGTGTTGGAAAAACTTGACAATTTAGGGAGTCTCTATCCACGGATGGAAGACATTGCCAGTGATG ATGATAGAGAACATGGCAGTGATGGAGCTGAGGATAATTCTGATTTCTCTAAACCAACCACAGATAAACGTAGTCCAGATTTGATTGACAGAAGAAGATC TAATATTGAGCTTGAGTATGGCATAGTTGATGCTCTCGAAGTTGCTCGACAAGTTGCTCAAGAAGTGGAGAGAGAAGTTGTAGATTTCAGAGAACAATCC TGTAGCTCATCTTCGGAGAAAATCATGGAAAGTGGTATTAAGCAGCCAGGTAGCCCAGACTCCATAAATGCAAAACAGGACCTATCCACTGAGATCCCTC CAGAAAACGTGCCAACCAGACAAAATCAGCCTTTTGAGACACATGCTGAACAAGAGGGGCGCATGATTGATTCAAATAATCTGGAAAATGAAGCAGAGAA TGGCATGCATGACCTGGAGTCCTCTCAGGTTACTGAAGTGGCCCAAGAACCAGAAGTTAACACACAGAAAGGCTTTTGTGATTTTGATCTGAATGAGGAA GTCTGTTCTGAAGACATGGATCGCCCCGTGAATACCATCTCCACCCCAATTTCTGTTGTTTCAGCTTCAAGACCTGCAGCAGCTTCTGGATCACCTGTAG CTCCTTTGCGGTTTGAGGGGACTCTTGGATGGAGAGGTTCTGCAGCTACTAGTGCTTTTCGTCCAGCTTCCCCACGCAAGACTTCTGATGGGGACAGGAC ACTTGAGACTGGGGGTAGCGGCAACAGTTCAAAACGAAGGCAGGTTTGCTTTGATATTGATCTCAATGTGGCTGGGTGTGGAGAGGAGAAGGTCATGGAT TTGATTTCGTCAAGACAAATGCCAGTCTCATCAGGCTTCCATTCCGGGGAATCTTCTTTGGAAGTGGGTTCAAGAAGACCAGAGAGACCCAACCTGGATT TAAATCGTACCAGTGATGATGGTGATGCTACACCGACAGATTTGAGATTGGAGGGACGGCTCTTTTACCAGTGGAATGGCCATCGCAGTCCATCTCCTGC TTTGTCATCGTCTTCAAGGCAGCCTTCAATGAGGAACTTTGATTTGAATGACAGTCCTTTCTTCCAGAACGACTCCTTGGATCAAGGGCTCTATCATAGC AAGACTTCCCAAACTGCAAGTGCTTATGGAGGACCTAAACCAGGTGATCCTGTTATTTCTATCATGGGTACTAGAGTAGAAGTGGGGAGTAGAATGGAAG TTGACAGAAAGGGTTTTATTCCTCAGACTCCATCCATGCCAAATGGCAAGCCTCTGGAACATGCAATGGACGCAAATCTTACAAGAATGGGAGCTGTTTT GGGTATTGTCCCCTCTGTGTCATACACGCACTCTCCTGTTTTTGGGTTCAATGCACTGGCAACAGCACCTGCCATGCCCATCTCTTCGGCCATGTATGGC CCTACTGGCTCAATCCCTTATATGGTGGATTCAAGAGGAGCCCCTGTCATGCCTCAAATAATGGGCTCTACACCAGCTGTTCCTCCTTACTCCCAGCAAC CATTCTTCATGAGCATGAGCGGAGCACCCCTAGGTTTAAATGGTGCTGGGCCCTCACGGCCTAGCTTTGACTTAAATTCTGGTTTTACGATGGAAGGGGG AAGCATAGGTGGTTTGCGGCAGCTACTCATGCCTGGCCAAGGCAGCTCACAGCCTTCTTCAAGCTCTGGGGTGGGTGGGAAAAGGAAGGAACCGGATAGT GGGTGGGAACCCGCTTGA
AA sequence Show only first row Show all	>Potri.005G241400.2 pacid=42803524 polypeptide=Potri.005G241400.2.p locus=Potri.005G241400 ID=Potri.005G241400.2.v4.1 annot-version=v4.1 MTLEDFFTLTEMKDGLTAPSRVHELVAVMKKEKFTVVKNIGDATRQWAAVASTVAATENKDCLDLFINLDGLLFFDRWLKLAQKFSNETGEGSVEESITA LLRALEKLQIDKERSITSGVWDTVNNLLDHNSSRVQDRARALFNSWKPGEVSDAIHHDVQSVGAFDNVGMKDSNTGKTECVVLDVPLSNRRADVENNAAE QTGDESLQSRSSNCLPAESTQDVQIQTNDCDHQNLDHRNLENRTQDPLTTSVDRSLDPRSPPVVSTSDQESPPFKEKSQVSSTVEGAASTETHSLAVPKG HTAEPDSEAPKMLTDKSAASSNVEAAVISLSNVAGNAQEIVTGSALQNNIDTKEDNCRTSASGDVAAPLSTSKVGTDEVENRNQCQTPMFNSTAKDGEFS PDPSQHLSGNKSVLEKLDNLGSLYPRMEDIASDDDREHGSDGAEDNSDFSKPTTDKRSPDLIDRRRSNIELEYGIVDALEVARQVAQEVEREVVDFREQS CSSSSEKIMESGIKQPGSPDSINAKQDLSTEIPPENVPTRQNQPFETHAEQEGRMIDSNNLENEAENGMHDLESSQVTEVAQEPEVNTQKGFCDFDLNEE VCSEDMDRPVNTISTPISVVSASRPAAASGSPVAPLRFEGTLGWRGSAATSAFRPASPRKTSDGDRTLETGGSGNSSKRRQVCFDIDLNVAGCGEEKVMD LISSRQMPVSSGFHSGESSLEVGSRRPERPNLDLNRTSDDGDATPTDLRLEGRLFYQWNGHRSPSPALSSSSRQPSMRNFDLNDSPFFQNDSLDQGLYHS KTSQTASAYGGPKPGDPVISIMGTRVEVGSRMEVDRKGFIPQTPSMPNGKPLEHAMDANLTRMGAVLGIVPSVSYTHSPVFGFNALATAPAMPISSAMYG PTGSIPYMVDSRGAPVMPQIMGSTPAVPPYSQQPFFMSMSGAPLGLNGAGPSRPSFDLNSGFTMEGGSIGGLRQLLMPGQGSSQPSSSSGVGGKRKEPDS GWEPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24200			Transcription elongation facto...		Potri.005G241400 [exp]	0	1
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.009G136000 [exp]	1.41	0.9056
AT4G02720			unknown protein		Potri.002G051500 [exp]	2.64	0.9198
AT2G35230		IKU1	HAIKU1, VQ motif-containing pr...		Potri.001G142400 [exp]	3.00	0.9015
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.008G109200 [exp]	4.89	0.8775
AT1G29350			Kinase-related protein of unkn...		Potri.001G353100 [exp]	6.32	0.8585
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Potri.009G046800 [exp]	6.32	0.8834
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Potri.001G015900 [exp]	7.21	0.8858	Pt-EIL3.2
AT1G03370			C2 calcium/lipid-binding and G...		Potri.006G003200 [exp]	7.34	0.8830
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Potri.017G059600 [exp]	7.74	0.8618	Pt-HSFA5.2
AT2G39760		ATBPM3	BTB/POZ/MATH-domains containin...		Potri.008G059600 [exp]	8.71	0.8439

Compare expression of checked genes

Potri.005G241400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.