Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CLV1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75820 1269 / 0 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 993 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 962 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 865 / 0 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT5G61480 662 / 0 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT1G28440 603 / 0 HSL1 HAESA-like 1 (.1) AT4G28650 602 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G08590 599 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G09970 550 / 1e-180 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G25930 545 / 1e-178 Protein kinase family protein with leucine-rich repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G019900 [exp] 1588 / 0 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G009200 [exp] 988 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G073600 [exp] 900 / 0 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G157300 [exp] 897 / 0 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G223900 [exp] 842 / 0 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.003G107600 [exp] 667 / 0 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.002G256500 [exp] 652 / 0 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.001G126100 [exp] 648 / 0 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.019G021700 [exp] 646 / 0 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013562 [exp] 1321 / 0 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10017267 [exp] 1316 / 0 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10039641 [exp] 972 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 968 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011576 [exp] 915 / 0 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10036242 [exp] 852 / 0 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10037358 [exp] 818 / 0 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10035783 [exp] 708 / 0 AT5G65700 857 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10038930 [exp] 658 / 0 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10027221 [exp] 655 / 0 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.005G241500.1 pacid=42804844 polypeptide=Potri.005G241500.1.p locus=Potri.005G241500 ID=Potri.005G241500.1.v4.1 annot-version=v4.1 ATGAGAACATTTCTGTGCTTTTTTCTTTTACTAGTACTATTGTTCGCTCCTTGCAGTGGATACAGTGATCTTGAAGTCCTCTTGAAGCTGAAAACCTCCA TGTATGGACATAATGGCACTGGCCTTCAAGATTGGGTGGCTTCTCCAGCATCTCCCACAGCTCACTGTTACTTCTCTGGAGTCACGTGTGATGAGGACTC GCGTGTGGTGTCTCTAAACGTGTCGTTTAGACATCTTCCTGGTTCAATTCCTCCAGATATTGGGCTGTTGAACAAGCTTGTGAATCTTACTCTGTCAGGT AATAATCTCACGGGGGGATTTCCAGTGGAGATAGCCATGCTGACATCTCTCAGGATTTTGAATATTTCCAACAATGTTATTGCTGGGAATTTCCCCGGAA AAATCACTCTTGGCATGGCACTGCTTGAGGTTCTTGATGTTTACAACAATAATTTTACGGGTGCATTGCCAACTGAAATTGTAAAGCTGAAAAATCTCAA GCATGTTCATCTTGGAGGGAATTTCTTTTCTGGTACAATACCGGAGGAGTACTCGGAGATTTTGAGCTTGGAGTACTTGGGCTTGAATGGTAATGCGCTT TCAGGCAAAGTACCTTCAAGCTTGTCCAGGTTGAAGAATCTTAAGAGCTTGTGCGTTGGGTACTTTAACCGTTATGAGGGGAGTATTCCACCTGAATTTG GGTCATTAAGTAATCTTGAACTTCTTGACATGGCTTCCTGTAACCTTGACGGTGAGATTCCTTCCGCTTTAAGTCAATTAACCCATCTGCATTCGTTGTT TCTTCAAGTCAATAATCTCACTGGCCATATCCCTCCTGAATTATCTGGTCTAATTAGCTTGAAATCACTGGATCTTTCGATAAACAACCTCACTGGGGAG ATACCAGAGAGTTTTTCAGATTTGAAAAACATAGAACTGATCAATCTCTTTCAAAACAAGCTGCACGGTCCAATCCCAGAATTTTTTGGTGATTTTCCGA ACCTTGAGGTGCTTCAGGTTTGGGGCAACAACTTCACTTTTGAGCTTCCTCAAAATCTTGGCCGGAATGGGAAGCTGATGATGCTGGATGTGTCTATTAA TCACTTAACTGGATTGGTCCCGCGGGATTTATGCAAAGGAGGGAAATTGACGACGTTGATTCTCATGAACAATTTCTTCCTTGGATCGCTTCCTGATGAA ATTGGCCAGTGCAAGTCCTTGCTCAAAATCCGAATAATGAATAATATGTTTTCAGGAACTATCCCTGCTGGGATATTTAATTTGCCTTTGGCGACACTTG TTGAGTTGAGCAATAACCTTTTCTCTGGCGAGCTTCCACCAGAGATTTCAGGAGATGCACTAGGCCTTTTATCAGTTTCTAACAATCGGATCACAGGTAA AATCCCGCCTGCTATTGGGAATCTGAAGAACTTGCAGACTCTGTCACTGGACACGAACAGACTTTCTGGTGAAATTCCTGAAGAAATCTGGGGACTGAAG TCCCTCACCAAGATCAACATCCGTGCTAACAACATCAGAGGTGAAATCCCAGCTTCGATTTCCCACTGCACATCACTTACATCCGTTGATTTCAGTCAAA ACAGCCTCAGTGGGGAGATTCCTAAGAAGATTGCCAAACTGAACGATTTGAGCTTTCTTGATCTCTCTCGAAATCAACTCACTGGTCAACTACCAGGTGA AATTGGATACATGAGAAGCCTTACATCCCTTAATCTCTCATACAACAATTTATTTGGCAGGATCCCTTCTGCCGGCCAATTCCTGGCGTTCAATGACAGT TCATTTCTCGGAAATCCAAATCTCTGTGCAGCGAGAAATAATACTTGCTCCTTCGGTGATCATGGCCATAGGGGGGGGTCTTTTAGTACTTCAAAGCTAA TAATCACTGTCATTGCACTCGTCACTGTTTTGCTGTTAATAGTTGTGACGGTTTACAGATTGAGAAAGAAGAGGCTGCAGAAATCACGGGCCTGGAAGCT CACTGCATTCCAAAGGCTCGACTTCAAGGCAGAGGACGTGCTTGAGTGCTTGAAAGAGGAAAACATTATAGGCAAAGGTGGTGCTGGTATTGTCTACCGT GGGTCAATGCCAGAGGGTGTTGATCATGTAGCTATCAAACGACTTGTTGGTCGAGGCAGCGGAAGAAGTGATCATGGCTTCTCGGCTGAGATTCAAACTC TTGGAAGAATCAGGCACCGAAATATTGTAAGGCTGTTGGGGTACGTATCGAATAAGGATACCAACTTGCTATTGTATGAATACATGCCTAATGGAAGCTT AGGGGAGCTTTTGCATGGTTCAAAGGGAGGCCATTTGCAGTGGGAGACTAGATACAGAATTGCTGTGGAGGCTGCTAAGGGACTCTGTTATCTTCACCAC GATTGCTCGCCTTTGATTATACATAGGGATGTTAAGTCCAATAACATATTACTTGATTCCGATTTTGAGGCTCATGTTGCTGATTTTGGTCTCGCTAAGT TCTTACAAGATGCAGGCTCATCAGAGTGCATGTCCTCCGTTGCTGGCTCCTATGGTTACATTGCTCCAGAGTACGCATACACACTGAAAGTGGACGAAAA GAGTGATGTTTACAGTTTTGGTGTTGTGCTGCTGGAGCTGATAGCAGGGAGAAAGCCAGTCGGGGAGTTTGGAGATGGGGTGGACATCGTGAGGTGGGTC AGGAAGACCACATCAGAACTCTCTCAGCCATCTGATGCAGCTACAGTCTTGGCAGTTGTGGACCCCAGGCTTAGTGGGTACCCACTTGCAGGTGTCATTC ACTTGTTTAAGATAGCTATGCTGTGTGTTAAAGATGAGAGCTCAGCCAGGCCCACCATGAGGGAAGTTGTTCACATGCTCACCAATCCTCCACAATCTGC CCCCAGCCTACTCGCCCTTTAG
AA sequence Show only first row Show all	>Potri.005G241500.1 pacid=42804844 polypeptide=Potri.005G241500.1.p locus=Potri.005G241500 ID=Potri.005G241500.1.v4.1 annot-version=v4.1 MRTFLCFFLLLVLLFAPCSGYSDLEVLLKLKTSMYGHNGTGLQDWVASPASPTAHCYFSGVTCDEDSRVVSLNVSFRHLPGSIPPDIGLLNKLVNLTLSG NNLTGGFPVEIAMLTSLRILNISNNVIAGNFPGKITLGMALLEVLDVYNNNFTGALPTEIVKLKNLKHVHLGGNFFSGTIPEEYSEILSLEYLGLNGNAL SGKVPSSLSRLKNLKSLCVGYFNRYEGSIPPEFGSLSNLELLDMASCNLDGEIPSALSQLTHLHSLFLQVNNLTGHIPPELSGLISLKSLDLSINNLTGE IPESFSDLKNIELINLFQNKLHGPIPEFFGDFPNLEVLQVWGNNFTFELPQNLGRNGKLMMLDVSINHLTGLVPRDLCKGGKLTTLILMNNFFLGSLPDE IGQCKSLLKIRIMNNMFSGTIPAGIFNLPLATLVELSNNLFSGELPPEISGDALGLLSVSNNRITGKIPPAIGNLKNLQTLSLDTNRLSGEIPEEIWGLK SLTKINIRANNIRGEIPASISHCTSLTSVDFSQNSLSGEIPKKIAKLNDLSFLDLSRNQLTGQLPGEIGYMRSLTSLNLSYNNLFGRIPSAGQFLAFNDS SFLGNPNLCAARNNTCSFGDHGHRGGSFSTSKLIITVIALVTVLLLIVVTVYRLRKKRLQKSRAWKLTAFQRLDFKAEDVLECLKEENIIGKGGAGIVYR GSMPEGVDHVAIKRLVGRGSGRSDHGFSAEIQTLGRIRHRNIVRLLGYVSNKDTNLLLYEYMPNGSLGELLHGSKGGHLQWETRYRIAVEAAKGLCYLHH DCSPLIIHRDVKSNNILLDSDFEAHVADFGLAKFLQDAGSSECMSSVAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIAGRKPVGEFGDGVDIVRWV RKTTSELSQPSDAATVLAVVDPRLSGYPLAGVIHLFKIAMLCVKDESSARPTMREVVHMLTNPPQSAPSLLAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Potri.005G241500 [exp]	0	1	CLV1.2
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Potri.010G197500 [exp]	2.64	0.9290
AT5G63710			Leucine-rich repeat protein ki...		Potri.019G001800 [exp]	3.00	0.9261
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Potri.018G006000 [exp]	3.16	0.9451	Pt-VHA1.1
AT5G27370			Protein of unknown function (D...		Potri.013G027200 [exp]	3.87	0.9320
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Potri.001G137600 [exp]	5.74	0.9242
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.004G046100 [exp]	6.92	0.9201
AT1G03670			ankyrin repeat family protein ...		Potri.018G077500 [exp]	7.54	0.9179
AT3G51430		SSL5, YLS2	YELLOW-LEAF-SPECIFIC GENE 2, S...		Potri.005G099400 [exp]	8.30	0.9145
AT5G63380			AMP-dependent synthetase and l...		Potri.015G092300 [exp]	8.83	0.9301
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.013G103500 [exp]	10.39	0.9182

Compare expression of checked genes

Potri.005G241500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.