Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20080 816 / 0 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G20990 780 / 0 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT5G04220 568 / 0 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G21010 306 / 1e-101 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G05500 247 / 8e-75 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G11100 227 / 3e-67 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61050 214 / 5e-63 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G21040 127 / 4e-33 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 102 / 9e-23 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1) AT3G61030 97 / 4e-21 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G019800 [exp] 949 / 0 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.009G134200 [exp] 867 / 0 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.004G174600 [exp] 860 / 0 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.008G038300 [exp] 658 / 0 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G223900 [exp] 654 / 0 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.018G124000 [exp] 254 / 3e-77 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G063900 [exp] 248 / 6e-75 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 231 / 7e-69 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.014G072800 [exp] 202 / 2e-58 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017268 [exp] 881 / 0 AT1G20080 868 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10013563 [exp] 868 / 0 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10019782 [exp] 800 / 0 AT2G20990 825 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10014127 [exp] 794 / 0 AT2G20990 821 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10005069 [exp] 757 / 0 AT2G20990 766 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10027842 [exp] 674 / 0 AT2G20990 695 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10037993 [exp] 620 / 0 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10040414 [exp] 599 / 0 AT5G04220 667 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10026515 [exp] 557 / 0 AT5G04220 615 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10009226 [exp] 533 / 0 AT5G04220 603 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0648 [poplar] [flax] Aha1_BPI PF17047 [poplar] [flax] SMP_LBD Synaptotagmin-like mitochondrial-lipid-binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G241700.1 pacid=42802742 polypeptide=Potri.005G241700.1.p locus=Potri.005G241700 ID=Potri.005G241700.1.v4.1 annot-version=v4.1 ATGGGAATATTGAGTAGTATATTGGGATTTTGTGGTTTTGGAGTAGGAACGTCAATTGGGATTGTAATTGGGTACTACATGTTTATCTATTTTGAGCCAA CTGATGTCAAGGATCCTGTAGTCCGTCCTTTGATTGAACAAGACTCGAAAACTTTACAACGTCTGCTTCCAGAAATACCCCAGTGGGTGAAAAATCCAGA CTATGATCGGGTTGACTGGCTTAACAAATTGATTGAGAACATGTGGCCTTACCTAGATACGGCAATCTGCAAGACTGCAAAGACTATAGCGAAGCCCATT ATTGCTGAGCTAATTCCAAAATACAAAATTGACTCTGTTGAATTCGAAACACTTACCTTGGGCTCCCTGCCACCAACTTTTCCAGGAATGAAAGTTTATG TCACTGGTGAGAAAGAGCTGATCATGGAACCGGTATTGAAGTGGGCTGGGAATCCAAATATTATCATTGCAGTTAAAGCATTTGGTCTGAAAGCCACAGT TCAGGTGGTTGATTTGCAAGTATTTGCCACTCCACGTATCACCCTAAAGCCTTTGGTTCCTTCATTTCCTTGTTTTGCCAATATATATGTGTCTCTGCTA CAGAAGCCACATGTTGACTTTGGATTGAAATTGCTTGGAGCTGATGCTATGTCCATTCCTGGCCTGTACAAATTTGTCCAGGAGCTTATCAAAGATCAGG TTGCAAGTATGTATTTATGGCCAAAAACCCTAGTAGTGCCAATCGTGGATGCTTCAAAAGCCATGAAGCGACCTGTTGGGATACTCACTGTGAAGGTTCT GAAGGCAACGGAGCTTAAAAAGAAAGATCTGTTAGGGGGATCAGACCCATATGTGAAATTAAAGCTTACTGAAGATGCGCTTCCTTCAAAGAAAACAACT GTTAAAAACAAAAACTTGAACCCCGAATGGAATGAGGAGTTTAATATCACCGTTAAGGACCCAGAATCTCAAGCCTTGGAGATTCTTGTCTACGATTGGG AACAGGTTGGCAAACACGACAAGATGGGTATGAATGTCATTCCATTGAAAGATCTGACACCGGATGAGCAAAAGGTTATGACTCTTGATCTGCTAAAAAA TATGGATCCAAATGATGTTCAAAATAAGAAATCACGTGGACAGATTGTTGTTGAAGTGGTATACAAACCTTTTAAGGATCTCGAGGCAGAAAAGGATATA GTTGATCCAAGTGCAGTGGGAAAAGCTCCTGAAGGAACACCTGCTGGTGGTGGTCTGTTAGTAGTTATTGTACATGAAGCTCAAGATGTTGAAGGGAAGC ACCACACAAATCCTTATGTTCGATTACTTTTCAAAGGGGAGGACAAAAGAACTAAGCAAGTGAAGAAAAATAGAGATCCAAGATGGGGGGAGGATTTTCA GTTCACGCTGGACGAACCACCTACAAATGAAAGACTTCATGTGGAAGTTCTTAGTTCCTCAAAGATGTCTCTACTTCACTCTAAGGAAAACCTGGGTTAT GTGATTATAAACCTAGCAGATGTCGTGACAAACAGGAGAATCAACGAGAAGTACAATCTCATTGACTCCAGGAATGGTCAAATCCAAATTGAGCTGCAAT GGAAAACATCTTGA
AA sequence Show only first row Show all	>Potri.005G241700.1 pacid=42802742 polypeptide=Potri.005G241700.1.p locus=Potri.005G241700 ID=Potri.005G241700.1.v4.1 annot-version=v4.1 MGILSSILGFCGFGVGTSIGIVIGYYMFIYFEPTDVKDPVVRPLIEQDSKTLQRLLPEIPQWVKNPDYDRVDWLNKLIENMWPYLDTAICKTAKTIAKPI IAELIPKYKIDSVEFETLTLGSLPPTFPGMKVYVTGEKELIMEPVLKWAGNPNIIIAVKAFGLKATVQVVDLQVFATPRITLKPLVPSFPCFANIYVSLL QKPHVDFGLKLLGADAMSIPGLYKFVQELIKDQVASMYLWPKTLVVPIVDASKAMKRPVGILTVKVLKATELKKKDLLGGSDPYVKLKLTEDALPSKKTT VKNKNLNPEWNEEFNITVKDPESQALEILVYDWEQVGKHDKMGMNVIPLKDLTPDEQKVMTLDLLKNMDPNDVQNKKSRGQIVVEVVYKPFKDLEAEKDI VDPSAVGKAPEGTPAGGGLLVVIVHEAQDVEGKHHTNPYVRLLFKGEDKRTKQVKKNRDPRWGEDFQFTLDEPPTNERLHVEVLSSSKMSLLHSKENLGY VIINLADVVTNRRINEKYNLIDSRNGQIQIELQWKTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Potri.005G241700 [exp]	0	1
AT3G49290		ABIL2	ABL interactor-like protein 2 ...		Potri.003G142800 [exp]	1.73	0.8173
AT1G69450			Early-responsive to dehydratio...		Potri.010G164100 [exp]	1.73	0.8760
AT5G01500		TAAC	thylakoid ATP/ADP carrier (.1)		Potri.006G099800 [exp]	2.00	0.8273
AT4G32140			EamA-like transporter family (...		Potri.006G266400 [exp]	6.70	0.7978
AT5G65550			UDP-Glycosyltransferase superf...		Potri.010G182650 [exp]	8.83	0.8044
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Potri.014G147900 [exp]	13.96	0.8090
					Potri.011G107500 [exp]	15.87	0.7677
AT2G37260	WRKY	DSL1, ATWRKY44,...	TRANSPARENT TESTA GLABRA 2, DR...		Potri.016G083600 [exp]	16.37	0.8136
AT4G21220		AtLpxD2	lipid X D2, Trimeric LpxA-like...		Potri.004G039400 [exp]	21.49	0.6941
					Potri.010G223733 [exp]	21.81	0.8022

Compare expression of checked genes

Potri.005G241700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.