Plant FIBer expression Database

Potri.005G241800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G019700
[exp]
233 / 8e-77 AT1G20070 / unknown protein
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF15365 PNRC Proline-rich nuclear receptor coactivator motif
Representative CDS sequence
>Potri.005G241800.1 pacid=42803593 polypeptide=Potri.005G241800.1.p locus=Potri.005G241800 ID=Potri.005G241800.1.v4.1 annot-version=v4.1
ATGGAGGCCCGTTTTGCACCATCAACAGCAGATCGTCATCAATCAATCTCTCCATCCAAGAAAATGAAAAACCCAGCAAAGAAAATCAACCACACTGCTA
GTCGCAGTTTCATTTCAAGATCCGTAGAAAACTTGCCTCCTATGAACCACAATAACTACAGAAACAACAGCCATGGAGTCCTCTTTTTTGCTCCTCGACA
TGATTCCCTCTACTTCTCCTACCCTCCTCCATCTTCACAGTCCGTTTTAAATTCACACCAGCAAAATTATTACCATGAGAGGCATGCCAAGCCACTTTCT
TTTCCTCTTCCGATCTCTAAACCCCACCACAACTCTCTTCCTTCTCGAAGCTGGGGCCTCTCTTGCCCACCTTCTGCTACAAGAAAGACTAATAGACCCA
GAGACCAATCTCTCACTCCGAAGAAATCCAAACAACCCAACACCAAAAAGGTAGAAGAGCCAAAGGAACAATCTCTGATTATTGGATCTACTGTACCACT
AGGACCTGACCCAAAAGATTTGCCAAAAGATGTTTCAAAGGTTTTATCATCGTCATCAGCGACAGTATCAGGTAATGGTGTTATTAATAGTACTGTTTTA
ATGGAAGATTTTGAGAAGTTTTCAGGTTCGGCGTTTGCACTATCTCCACATCCAAGCAGCTTACCTTTGCCCAAGTTTTCCATGAGACCAAAGCTTAGTT
GTTCTGCTGAAGCTGCCGGGATTGATGCTGGAGCTACAGATAATCTCCGGCGACTTTTACGTCTCCGGTGA
AA sequence
>Potri.005G241800.1 pacid=42803593 polypeptide=Potri.005G241800.1.p locus=Potri.005G241800 ID=Potri.005G241800.1.v4.1 annot-version=v4.1
MEARFAPSTADRHQSISPSKKMKNPAKKINHTASRSFISRSVENLPPMNHNNYRNNSHGVLFFAPRHDSLYFSYPPPSSQSVLNSHQQNYYHERHAKPLS
FPLPISKPHHNSLPSRSWGLSCPPSATRKTNRPRDQSLTPKKSKQPNTKKVEEPKEQSLIIGSTVPLGPDPKDLPKDVSKVLSSSSATVSGNGVINSTVL
MEDFEKFSGSAFALSPHPSSLPLPKFSMRPKLSCSAEAAGIDAGATDNLRRLLRLR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G20070 unknown protein Potri.005G241800
[exp]
0 1
AT1G77110 PIN6 PIN-FORMED 6, Auxin efflux car... Potri.002G072200
[exp]
1.73 0.9320
AT1G05370 Sec14p-like phosphatidylinosit... Potri.010G088300
[exp]
2.44 0.9381
AT4G24780 Pectin lyase-like superfamily ... Potri.006G196400
[exp]
8.06 0.9158
AT2G20590 Reticulon family protein (.1.2... Potri.007G137700
[exp]
9.11 0.9397
AT5G15350 AtENODL17 early nodulin-like protein 17 ... Potri.004G121100
[exp]
10.58 0.9249
AT4G35730 Regulator of Vps4 activity in ... Potri.007G059800
[exp]
13.41 0.9288
AT4G20900 TDM1, MS5 MALE-STERILE 5, Tetratricopept... Potri.001G465401
[exp]
13.60 0.9268
AT4G22190 unknown protein Potri.006G283300
[exp]
15.16 0.9093
AT4G18550 AtDSEL Arabidopsis thaliana DAD1-like... Potri.004G054800
[exp]
16.00 0.8690
AT3G05910 Pectinacetylesterase family pr... Potri.013G000900
[exp]
18.65 0.9190

Potri.005G241800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.