Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75850 1309 / 0 VPS35B VPS35 homolog B (.1) AT2G17790 1185 / 0 ZIP3, VPS35A ZIG suppressor 3, VPS35 homolog A (.1) AT3G51310 1120 / 0 VPS35C VPS35 homolog C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G019400 [exp] 1458 / 0 AT1G75850 1271 / 0.0 VPS35 homolog B (.1) Potri.005G110600 [exp] 1321 / 0 AT2G17790 1249 / 0.0 ZIG suppressor 3, VPS35 homolog A (.1) Potri.007G061520 [exp] 140 / 3e-39 AT1G75850 119 / 8e-33 VPS35 homolog B (.1) Potri.007G061540 [exp] 0 / 1 AT2G17790 0 / 1 ZIG suppressor 3, VPS35 homolog A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013565 [exp] 1315 / 0 AT1G75850 1306 / 0.0 VPS35 homolog B (.1) Lus10017272 [exp] 1309 / 0 AT1G75850 1304 / 0.0 VPS35 homolog B (.1) Lus10041880 [exp] 1250 / 0 AT2G17790 1261 / 0.0 ZIG suppressor 3, VPS35 homolog A (.1) Lus10028427 [exp] 1249 / 0 AT2G17790 1270 / 0.0 ZIG suppressor 3, VPS35 homolog A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03635 [poplar] [flax] Vps35 Vacuolar protein sorting-associated protein 35
Representative CDS sequence Show only first row Show all	>Potri.005G242100.1 pacid=42804641 polypeptide=Potri.005G242100.1.p locus=Potri.005G242100 ID=Potri.005G242100.1.v4.1 annot-version=v4.1 ATGATCTTAGCCGGAATAGAAGACGAAGACAAATGGCTAGCAGAAGGAATCGCCGGCATTCAACACAACGCCTTTTACATGCATCGCGCTTTGGACGCCA ACAATCTCCGAGACGCTCTCAAATGCTCAGCTCTAATGCTATCAGAGCTTCGAACTTCTAAACTCTCTCCGCACAAATACTACGATCTCTATATGAGAGC GTTTGATGAATTGAGGAAACTAGAGATGTTTTTCAAAGACGAGAGTAGGCATGGCGTTTCGATTGTTGATTTATACGAACTCGTGCAGCATGCTGGCAAT ATATTGCCTAGACTGTATCTACTGTGTACGGTAGGATCAGTGTATATCAAATCGAAGGAAGCTCCGGCTAAGGATGCGCTTAAGGATCTTGTAGAGATGT GTCGCGGTGTTCAAAATCCGATTCGAGGATTGTTTTTGAGAAGTTATCTTGCTCAAGTTAGCAGAGATAAATTACCCAACCTTGGGTCCGAGTATGAAGG AGGTGAGGACACAGCAATGGATGCAGTAGAATTTGTGCTGCAAAATTTCACCGAGATGAATAAACTTTGGGTTCGGATGCAGCATCAGGGGCCTGTTAGG ATTAGAGAGAAGCTGGAAAAGGAAAGAAATGAGCTTCGTGATCTTGTAGGGAAGAATCTCCATGTTCTTAGTCAGATTGAGGGCGTGAACCTTGAAATTT ACAGAGACACTGTTCTTCCCAGAGTTTTAGAGCAGATTGTCAACTGTAAAGATGAGCTGGCACAGTATTATTTAATGGACTGCATAATTCAAGTCTTTCC AGATGAGTACCACTTGCAGACCCTTGAGACATTGTTGGGGGCCTGCCCCCAGCTTCAGCCAACAGTTGACATTAAGACAGTGCTATCACGGTTAATGGAA AGATTGTCCAATTATGCTGCTTCAAGTCCGGATGTTTTACCCGAGTTCCTGCAAGTAGAAGCTTTTGCTAAATTGAGCAGTGCTATTGGAAAGGTGATTG AAGCACAGGTTGACATGCCTATTGTTGGAGCCGTTACTTTGTATGTGTCTCTCCTCACATTTACACTACACGTTCATCCTGAACGCCTTGATTATGTGGA TCAAGTACTGGGGGCATGTGTTAAGCTCCTCTTTGGCAAGCCAAAGCTTAAAGAGGGCAGAGCAACAAAACAAATTGTTGCACTTCTGAGTGCTCCATTA GAAAAGTACAATGACATTGTCACTGCCTTAACGCTGTCTAATTACCCTTGTGTCATGGACTGTCTTCATGATGAAACAAATAAAGTCATGGCAATGGTTA TTATTCAGAGCATTATGAAAAATAATACTTGCATTTCTACTGCTGACGAGATTGAGGTGTTGTTTGAATTATTAAAAGGACTGATAAAGGGTTTGGATGG GACTGCTGCAGATGAGCTCGACGAGGAGGATTTCAATGAAGAACAAAATTCTGTCGCTCGCCTTATACATATGCTTTATAATGATGATTCGGAGGAAATG TTGAAGATTATCTGCACTGTGAGGAAGCATATAATGGCTGGAGGGCCAACACGATTACCTTTTACAGTTCCTCCTCTCATATTCTCCGCACTCAGGTTGG TGAGAAAGTTGCAAGCTCAGGATGGAAATGTAGTAGGAGAAGAAGAGCCTGCAACACCTAAGAAAATTTTTCAGCTCCTGGATGAGACAATTGAGGCTCT TTCATCAGTTCCCTCACCTGAGCTGGCATTAAGGTTGTACTTGCAATGTGCTCAGGCTGCCAATGACTGTGATCTTGAGCCAGTTGCTTATGAATTTTTT ACACAGGCATTCATATTATATGAAGAAGAAGTTGTGGACTCAAAGGCCCAGGTGACTGCAATGCATCTAATAATTGGGGCTCTCCAGAGGATGAATGTAT TGGGTGTTGAGAACAGGGACACTCTAACACACAAGGCCACAGGATATTCTGCAAAGCTTTTGAAGAGACCTGATCAGTGCAGAGCAGTGTACGCTTGCTC ACATCTATTTTGGGTTGATGAAAAGGATGGCATCAAGGATGGGGAAAGGGTCCTCCTTTGCCTCAAGCGTGCCTTGAGAATTGCAAATGCAGCTCAGCAG ATGGCCAATGCAGTAAGTGGTACAAGTGGGCCGGTCACATTGTTTGTTGAAATACTGAACAAGTACCTGTACTTTTTTGAGAAAGGAAACCCACAGGTTA CCAGTGCTGCAATCCAGGGGCTGGTAGAATTAATCGCTAATGAGATGCAGAGTGACTCCACCACACCAGATCCAGCATCAGATGCCTTCTTTGCCAGCAC AATCCGGTACATTCAGTTCCAGAAACAAAAGGGAGGTGTCGTGGGTGAGAAATTTGGGCCTATCAAGGTGTAA
AA sequence Show only first row Show all	>Potri.005G242100.1 pacid=42804641 polypeptide=Potri.005G242100.1.p locus=Potri.005G242100 ID=Potri.005G242100.1.v4.1 annot-version=v4.1 MILAGIEDEDKWLAEGIAGIQHNAFYMHRALDANNLRDALKCSALMLSELRTSKLSPHKYYDLYMRAFDELRKLEMFFKDESRHGVSIVDLYELVQHAGN ILPRLYLLCTVGSVYIKSKEAPAKDALKDLVEMCRGVQNPIRGLFLRSYLAQVSRDKLPNLGSEYEGGEDTAMDAVEFVLQNFTEMNKLWVRMQHQGPVR IREKLEKERNELRDLVGKNLHVLSQIEGVNLEIYRDTVLPRVLEQIVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLME RLSNYAASSPDVLPEFLQVEAFAKLSSAIGKVIEAQVDMPIVGAVTLYVSLLTFTLHVHPERLDYVDQVLGACVKLLFGKPKLKEGRATKQIVALLSAPL EKYNDIVTALTLSNYPCVMDCLHDETNKVMAMVIIQSIMKNNTCISTADEIEVLFELLKGLIKGLDGTAADELDEEDFNEEQNSVARLIHMLYNDDSEEM LKIICTVRKHIMAGGPTRLPFTVPPLIFSALRLVRKLQAQDGNVVGEEEPATPKKIFQLLDETIEALSSVPSPELALRLYLQCAQAANDCDLEPVAYEFF TQAFILYEEEVVDSKAQVTAMHLIIGALQRMNVLGVENRDTLTHKATGYSAKLLKRPDQCRAVYACSHLFWVDEKDGIKDGERVLLCLKRALRIANAAQQ MANAVSGTSGPVTLFVEILNKYLYFFEKGNPQVTSAAIQGLVELIANEMQSDSTTPDPASDAFFASTIRYIQFQKQKGGVVGEKFGPIKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75850		VPS35B	VPS35 homolog B (.1)		Potri.005G242100 [exp]	0	1
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Potri.010G022100 [exp]	2.23	0.6935
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Potri.005G257300 [exp]	13.07	0.6514
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.010G245100 [exp]	18.84	0.6477	NTN2.2
AT3G06540		AthREP	Rab escort protein (.1)		Potri.005G028900 [exp]	21.35	0.6351
AT5G50570	SBP	SPL13, SPL13A	SQUAMOSA PROMOTER-BINDING PROT...		Potri.012G100700 [exp]	22.09	0.6499
AT2G27900			unknown protein		Potri.009G002900 [exp]	28.14	0.6401
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.001G086000 [exp]	29.47	0.6257
AT2G36810			ARM repeat superfamily protein...		Potri.006G120800 [exp]	40.58	0.6278
AT1G76280			Tetratricopeptide repeat (TPR)...		Potri.001G047200 [exp]	41.95	0.6070
AT1G18610			Galactose oxidase/kelch repeat...		Potri.005G013000 [exp]	45.43	0.6136

Compare expression of checked genes

Potri.005G242100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.