Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35940 42 / 0.0003 unknown protein AT1G20100 40 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G019200 [exp] 174 / 1e-53 AT1G20100 71 / 6e-14 unknown protein Potri.005G242400 [exp] 164 / 1e-49 AT1G20100 51 / 3e-07 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013567 [exp] 49 / 1e-06 AT2G17787 45 / 3e-05 unknown protein Lus10017274 [exp] 42 / 0.0002 AT2G17787 44 / 7e-05 unknown protein Lus10034539 [exp] 42 / 0.0003 AT1G75860 56 / 1e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G242300.1 pacid=42803852 polypeptide=Potri.005G242300.1.p locus=Potri.005G242300 ID=Potri.005G242300.1.v4.1 annot-version=v4.1 ATGTCTCGGTGCTTTCCTTACCTGCCTCCGGGCTACCTTACCGAATCGATTAAGCTCCAAGGGGAGAGTTTCGAGAAGGGAAAGCATGAAGGGAGAAAGA GGGGGGAGAAGAAAGAAAGAAGGAAGCATAGGAAAGGAAACAGTGAGGAAAGAAGTCGTGTTGGTGATAAGTTCCATCGAGAGGACAAAAGGTTCCTTCC AAAGGAAAGAGGAGGAGAAGATGAAAAGAGCGATCTTACTGAGGAAGATAAGCAACCTCTGTCCTCTCAGAGCCTTTGCTACCTGTCTGATGGTGGTAAA ACTCATGGTACCATCATTCGGATTCAGCTGCCATTGAGAAGGCATAGAGAGCACGATGCACCTGTTAATGGAGCAGGGTTGTGCTCTTCTTTGGGAACAG CGGATTCTGTTCCTCAAAAGAATAAAATTGTTGAAACTTCTTTGAGATCATATGATAAGGAGATGCGGACAGCAGAATCACTTTACCAAGATTTGATTGC GAATTTGGAGGAATCTTTTCAGTTTGAGCTGAACAATCTTGTTGATCAGGAATGGCTTTTTGGGACAACAAAGCAAGACAGGCATGGATACAAAAGATTG AAAGTGTGCCATGATGTCTCGTGCCATGCTGATTCTACTACGAGGCTGTGTGCGCAATACTTACCCGAGGCAGATGTTTATGTATTACCTTATACAATTC CATTTTAA
AA sequence Show only first row Show all	>Potri.005G242300.1 pacid=42803852 polypeptide=Potri.005G242300.1.p locus=Potri.005G242300 ID=Potri.005G242300.1.v4.1 annot-version=v4.1 MSRCFPYLPPGYLTESIKLQGESFEKGKHEGRKRGEKKERRKHRKGNSEERSRVGDKFHREDKRFLPKERGGEDEKSDLTEEDKQPLSSQSLCYLSDGGK THGTIIRIQLPLRRHREHDAPVNGAGLCSSLGTADSVPQKNKIVETSLRSYDKEMRTAESLYQDLIANLEESFQFELNNLVDQEWLFGTTKQDRHGYKRL KVCHDVSCHADSTTRLCAQYLPEADVYVLPYTIPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17787			unknown protein		Potri.005G242300 [exp]	0	1
AT4G28990			RNA-binding protein-related (....		Potri.006G160500 [exp]	2.44	0.7263
AT1G21200	Trihelix		sequence-specific DNA binding ...		Potri.003G204700 [exp]	2.64	0.7412
AT4G18905			Transducin/WD40 repeat-like su...		Potri.007G019601 [exp]	3.46	0.7308
AT1G60650		AtRZ-1b	AtRZ-1b, RNA-binding (RRM/RBD/...		Potri.008G033000 [exp]	4.24	0.7208
AT1G70740			Protein kinase superfamily pro...		Potri.010G109700 [exp]	4.58	0.7091
AT2G30330		BLOS1	BLOC subunit 1, GCN5L1 family ...		Potri.013G156700 [exp]	4.89	0.6969
AT1G27650	C3HZnF	ATU2AF35A	U2 snRNP auxiliary factor smal...		Potri.005G258000 [exp]	9.48	0.6689
AT1G54390		ING2	INHIBITOR OF GROWTH 2, PHD fin...		Potri.019G033800 [exp]	24.26	0.6276
AT4G33690			unknown protein		Potri.009G082200 [exp]	24.53	0.5950
AT2G03820			nonsense-mediated mRNA decay N...		Potri.004G121500 [exp]	27.20	0.6276

Compare expression of checked genes

Potri.005G242300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.