Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20100 51 / 2e-07 unknown protein AT2G17787 52 / 3e-07 unknown protein AT1G75860 47 / 7e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G019200 [exp] 340 / 1e-117 AT1G20100 71 / 6e-14 unknown protein Potri.005G242300 [exp] 154 / 8e-46 AT2G17787 / unknown protein Potri.009G134800 [exp] 48 / 3e-06 AT4G35940 / unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034539 [exp] 74 / 1e-14 AT1G75860 56 / 1e-08 unknown protein Lus10033130 [exp] 71 / 1e-13 AT1G75860 51 / 5e-07 unknown protein Lus10013567 [exp] 64 / 3e-11 AT2G17787 45 / 3e-05 unknown protein Lus10017274 [exp] 61 / 2e-10 AT2G17787 44 / 7e-05 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G242400.1 pacid=42804292 polypeptide=Potri.005G242400.1.p locus=Potri.005G242400 ID=Potri.005G242400.1.v4.1 annot-version=v4.1 ATGTCTCGGTGCTTTCCTTACCCGCCTCCGGGCTACCAGATCGAGTCGATCAAGATCCGAAAGGAAAAGGAGAAGTCTATAACAGAAAGCCATAAAGATA TAAAGAAGGAGAAGAAAGAAAGAAGGAAGCATAGGAAAGAAAACAAGGACCAAATATGTTATACTGTGGGTAAGTCTCATCAAAAGGGGAAAACCTTCCT TCCAAGGGAAAAAAAGGAAGAAGCTGAAAAGAGTGATCTTACTGAAGAACACAATGAGCCCGTATGCCTTCAGAATATTTGCTATTTGTCTGATGATGGC ATTCGGAGCAACAAGAAGAGGAAATTGGAACAAGCAACTAATGATGACAAACCCCGTAATGTCTTCCGCATTAGGTTACCCTTGACAAGGCATAAAGAGC CAGATGTGCCTCTCAATAGTGAAGGGTTGTGTTCTACTTCGGGAAGGGCAGATTCTGTTTCTGGGCAGAATGAAGGTGTCCATTTATCCCATCAAGAAAC TGTCAATTCAAAGGCAGGTACTGTTGTCGGGGAACTTGCATCTCCAGAAAAAATGCCTTGCATTTCAGTTTCAGAGAAGAAGAGCACTGTTTGCCATGAA TCTGGGATTTCTCGGTTCAAATTGCCCAATAAGAAGATGCGGAAAGCAGACTCACCATACAAAGTCTTAATTGAGGATTGGGTTTCACCACCTCCTCAGT TTGAGCTTAATGATTCTGATGATCAAGAATGGCTTTCTGAGGCCTCAAAGCGAGAAAGGCATGGGAACAAGATACTAAATGCTTGCCGTGATGTCTTGTG TCACGAAAGTTCTTTGTTTCCACGCGGGCATTACTTGCCTGAAGCTGATGTATACGCATTACCTTATACTATTCCATTTTGA
AA sequence Show only first row Show all	>Potri.005G242400.1 pacid=42804292 polypeptide=Potri.005G242400.1.p locus=Potri.005G242400 ID=Potri.005G242400.1.v4.1 annot-version=v4.1 MSRCFPYPPPGYQIESIKIRKEKEKSITESHKDIKKEKKERRKHRKENKDQICYTVGKSHQKGKTFLPREKKEEAEKSDLTEEHNEPVCLQNICYLSDDG IRSNKKRKLEQATNDDKPRNVFRIRLPLTRHKEPDVPLNSEGLCSTSGRADSVSGQNEGVHLSHQETVNSKAGTVVGELASPEKMPCISVSEKKSTVCHE SGISRFKLPNKKMRKADSPYKVLIEDWVSPPPQFELNDSDDQEWLSEASKRERHGNKILNACRDVLCHESSLFPRGHYLPEADVYALPYTIPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20100			unknown protein		Potri.005G242400 [exp]	0	1
AT2G15760			Protein of unknown function (D...		Potri.009G105400 [exp]	2.44	0.7737
AT5G66580			unknown protein		Potri.004G149800 [exp]	18.43	0.7490
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Potri.009G066100 [exp]	22.97	0.7598	Pt-MPK3.2
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Potri.003G092200 [exp]	25.21	0.7522	ATMYC2.1
AT1G49780		PUB26	plant U-box 26 (.1)		Potri.009G100200 [exp]	28.12	0.6522
AT1G14060			GCK domain-containing protein ...		Potri.013G099100 [exp]	29.39	0.6614
AT3G47570			Leucine-rich repeat protein ki...		Potri.003G150000 [exp]	31.36	0.7418
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Potri.002G196200 [exp]	36.49	0.7339
					Potri.003G184501 [exp]	45.29	0.6937
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.015G023200 [exp]	51.08	0.6257

Compare expression of checked genes

Potri.005G242400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.