Plant FIBer expression Database

Potri.005G242500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42150 458 / 1e-163 Glutathione S-transferase family protein (.1)
AT5G16710 49 / 1e-06 DHAR3 dehydroascorbate reductase 1 (.1)
AT1G75270 41 / 0.0005 DHAR2 dehydroascorbate reductase 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G046600
[exp]
410 / 1e-144 AT5G42150 407 / 2e-143 Glutathione S-transferase family protein (.1)
Potri.015G038300
[exp]
410 / 2e-144 AT5G42150 387 / 1e-135 Glutathione S-transferase family protein (.1)
Potri.017G125100
[exp]
43 / 0.0002 AT5G16710 389 / 4e-138 dehydroascorbate reductase 1 (.1)
Potri.015G078900
[exp]
41 / 0.0002 AT5G63030 171 / 3e-56 glutaredoxin C1, Thioredoxin superfamily protein (.1)
Potri.013G102000
[exp]
42 / 0.0006 AT4G10000 434 / 2e-153 Thioredoxin family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013568
[exp]
483 / 2e-173 AT5G42150 459 / 8e-164 Glutathione S-transferase family protein (.1)
Lus10017275
[exp]
480 / 4e-172 AT5G42150 454 / 9e-162 Glutathione S-transferase family protein (.1)
Lus10023441
[exp]
44 / 5e-05 AT1G75270 327 / 3e-115 dehydroascorbate reductase 2 (.1)
Lus10040320
[exp]
45 / 7e-05 AT1G75270 320 / 4e-108 dehydroascorbate reductase 2 (.1)
Lus10028510
[exp]
42 / 0.0006 AT5G16710 352 / 2e-120 dehydroascorbate reductase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0172 Thioredoxin PF13417 GST_N_3 Glutathione S-transferase, N-terminal domain
CL0497 GST_C PF14497 GST_C_3 Glutathione S-transferase, C-terminal domain
Representative CDS sequence
>Potri.005G242500.1 pacid=42802721 polypeptide=Potri.005G242500.1.p locus=Potri.005G242500 ID=Potri.005G242500.1.v4.1 annot-version=v4.1
ATGAGAAGAGTTAACCACCTAGCCACCCTGAGCCGAGCCTTTTCCGGCGCGGCCTCTCATCAGCGGCTGGTTCAAGGAGCAGCAATGATAAGCACATACG
CAGCTTCAAATTCTCAGTGTTTTGCATCAAGAATCGCTGAAAGTTTTAGGATATCAAATCCCCCCGTCGCACGCGGTGTTACTGGGACTATGTTTTTCTC
TGTTGCGGCTTCCTCTTTGGCCCAAGAGGCGCAAGCTAAGGAAGCGCCGCCGGTGGAGAAGTTGATGCCGAAGGACGTCGTTCTTTACCAGTACGAAGCT
TGCCCTTTCTGCAACAAGGTGAAAGCGTTTTTGGATTACTACAATATACCATACAAAGTTGTGGAAGTCAACCCCATCAACAAAAAGGAGATCAAGTGGT
CTGATTACAAAAAGGTGCCTATACTGAAAATTGATGGAGAACAGATGGTTGATTCTTCAGATATAGTTGATAAATTGTTTCAAAGGATACATCCAGACAA
TTCTGTCACAGACAGTGATGAAGAAAGGCAATGGCGTGGGTGGGTGGACAATCACTTGGTGCATGTTTTGTCACCAAACATATATCGATCAGTTTCTGAA
GCTCTTGAATCATTTGACTATATCACCACCCATGGCAATTTCAGCTTCACGGAGAGGTTGGTAGCCAAGTATGCTGGTGCTACAGCAATGTACTTTGTGT
CGAAGAAGCTGAAGAAGAGACATAACATTACTGATGAACGTGCAGCCTTGTATGGTGCTGCAGAGACATGGGTGGATGCTTTGAAGGGTCGCCAATATCT
TGGTGGCTTAAAACCTAACCTAGCTGATCTTGCTGTTTTCAGCGTCCTAAGGCCCATCCGATACTTGAAGTCCGGTAAAGATATGGTGGAGCATACCCGT
ATCGGTGAGTGGTACTCTCGAATGGAAAATGCAGTTGGCGAGCCTAGTAGAATTAAGGCATAA
AA sequence
>Potri.005G242500.1 pacid=42802721 polypeptide=Potri.005G242500.1.p locus=Potri.005G242500 ID=Potri.005G242500.1.v4.1 annot-version=v4.1
MRRVNHLATLSRAFSGAASHQRLVQGAAMISTYAASNSQCFASRIAESFRISNPPVARGVTGTMFFSVAASSLAQEAQAKEAPPVEKLMPKDVVLYQYEA
CPFCNKVKAFLDYYNIPYKVVEVNPINKKEIKWSDYKKVPILKIDGEQMVDSSDIVDKLFQRIHPDNSVTDSDEERQWRGWVDNHLVHVLSPNIYRSVSE
ALESFDYITTHGNFSFTERLVAKYAGATAMYFVSKKLKKRHNITDERAALYGAAETWVDALKGRQYLGGLKPNLADLAVFSVLRPIRYLKSGKDMVEHTR
IGEWYSRMENAVGEPSRIKA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G42150 Glutathione S-transferase fami... Potri.005G242500
[exp]
0 1
Potri.004G038500
[exp]
4.89 0.9326
AT3G48070 RING/U-box superfamily protein... Potri.015G069400
[exp]
6.78 0.9202
AT4G25370 Double Clp-N motif protein (.1... Potri.015G131700
[exp]
11.09 0.9194
AT2G36130 Cyclophilin-like peptidyl-prol... Potri.016G075600
[exp]
12.60 0.8787
AT3G53630 unknown protein Potri.006G082400
[exp]
14.24 0.9072
AT2G31810 ACT domain-containing small su... Potri.007G142300
[exp]
15.87 0.9081
AT1G09830 Glycinamide ribonucleotide (GA... Potri.004G225500
[exp]
27.56 0.9046
AT1G56050 GTP-binding protein-related (.... Potri.001G457900
[exp]
28.35 0.9123
AT4G32605 Mitochondrial glycoprotein fam... Potri.008G015600
[exp]
30.59 0.8959
AT2G04030 Hsp88.1, AtHsp9... HEAT SHOCK PROTEIN 88.1, EMBRY... Potri.010G136800
[exp]
33.68 0.9113

Potri.005G242500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.