Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20110 555 / 0 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G14270 70 / 3e-12 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT4G33240 66 / 6e-11 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) AT3G43230 60 / 2e-09 RING/FYVE/PHD-type zinc finger family protein (.1) AT1G61690 59 / 6e-09 phosphoinositide binding (.1) AT1G29800 59 / 6e-09 RING/FYVE/PHD-type zinc finger family protein (.1.2) AT1G69710 54 / 4e-07 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 54 / 4e-07 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G76950 53 / 5e-07 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G47660 53 / 7e-07 Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G018900 [exp] 773 / 0 AT1G20110 566 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.003G072300 [exp] 73 / 4e-13 AT3G14270 2157 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.001G163200 [exp] 72 / 1e-12 AT3G14270 2134 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.006G135800 [exp] 63 / 4e-10 AT3G43230 649 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.011G071900 [exp] 62 / 4e-10 AT1G29800 744 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Potri.018G064200 [exp] 62 / 7e-10 AT3G43230 649 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.011G032200 [exp] 61 / 2e-09 AT1G61690 773 / 0.0 phosphoinositide binding (.1) Potri.004G062500 [exp] 60 / 3e-09 AT1G29800 729 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Potri.011G106700 [exp] 60 / 3e-09 AT1G29800 703 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017277 [exp] 652 / 0 AT1G20110 654 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013571 [exp] 649 / 0 AT1G20110 650 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10038127 [exp] 65 / 2e-10 AT4G33240 1429 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10038129 [exp] 64 / 4e-10 AT3G14270 1144 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10005173 [exp] 63 / 7e-10 AT4G33240 1063 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10027659 [exp] 62 / 7e-10 AT3G43230 654 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10007623 [exp] 61 / 1e-09 AT1G61690 354 / 6e-113 phosphoinositide binding (.1) Lus10018391 [exp] 61 / 2e-09 AT1G61690 838 / 0.0 phosphoinositide binding (.1) Lus10029271 [exp] 58 / 1e-08 AT1G29800 713 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Lus10007320 [exp] 58 / 1e-08 AT1G29800 709 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF01363 [poplar] [flax] FYVE FYVE zinc finger
Representative CDS sequence Show only first row Show all	>Potri.005G242700.5 pacid=42805249 polypeptide=Potri.005G242700.5.p locus=Potri.005G242700 ID=Potri.005G242700.5.v4.1 annot-version=v4.1 ATGCAACACGGAGATTACAGTTCTTACTATCAATATCCACACCTCCAAAACCCTAACCCTAACCCTAACCCTCCTATTGATCATCACCAAACCCCTTACG CATCCGCACCACCTTTCTCCTCCGGTTACACCCCCTCCGATTACTCCATTTATCCTCAAAATTACCCTCCTTATTCTCAAAACCCCGATCCTGTCCCTCC ACCTACAGCCCCTACATACACACCTACAACACCTACAACACCGAACCCTAATAATCCACAATCATCCTTCAATCCCCCACCGCCACCTCCACCACAACAA CCGCCATATTTTCCACCGTATGATTCTCATGGCTCCTACCAACCTCCAACAACTCAGCAATCTTATTTACCATCGTTTGATCAACATCAAACGTCTCCCA ATTACGCTCCTCAACCACCGCCTCCTAACTCTGCAGTAGCACCGAATCCTACTGGAGCAACTAATTCTCCATACACCTCGATGTACAGTGCTCCTTATAA CCCTATAGGATCGTCAGTGCCGCCTGTATACGATACGCCATATGAGAATCCGGTAAAATTTGATCAGAATTTCGGGTATTTGGAAGGCTATAATCGGAGC AGGAGCGATACAGGGTCTGATCTATATGGAAAGGAACCGGAGAGCAGGTACGATATTGGTGGCGGTCGTGATGATGGATATGGAGATGGTGTTTATGCAT ATGAAGGTGGTAAGGTTGAGCCTTACGGAGCACGAGGGACAGCGCCAAATTCATCGACCTGGGCTGGGTTCGATGATTATGGAAGATCAATTAGTTTTCC GTCTGGAAAGGATAATTCGGTGCGGTCCAGTTCTGGTTCAGGCTCGGGGAAGATTGTGAGGGCAGTGCCAAAGGTGGAGACGCAGGAGGATGTTAAGAGT GGTGTCCAGAAGTTTAGAGTTAAGATTTTGGCTGAAAGTGGAGGACAGGGTACTATGGATGTGCTTTGCGAGATTGGTTTGGATGGAATTCGTATGCTTG ATCCAAACACCAGCCGGACTTTGAGAATATATCCTCTTGAGAACATCACAAGATGTGACAAAATGGATTCATCTACCTTTGCATTTTGGTCCAAGAGTTC TGTGGATTTTGAGCCAAGACGTATTAGACTGCAATCAAATAGTTACACCACCAACACCCTTCTTGACACTGTGACTGCTGCAACTGTACAGCTCAAGGAA ATGGGTGGAGGAACAAGGCCTTCTGATACATCAAAGACAACTGAGCAGCCTACAGAGAAGAAGAAAGGGTTTGGTGATTTGATGAACTTGATAAAGCCAG GCAGTGAGGAGAAAGAACATTGGGTCCCTGATGAAGCTGTTTCAAAGTGTACATCATGCAGGATGGATTTTGGGGCTTTTGTTCGTCGGCATCACTGCAG AAACTGTGGAGACATTTTCTGTGACAAGTGCACCCAAGGAAGAATTGCTCTTACTGCTGATGAGAATGCTCAGCCGGTTAGAGTTTGTGACCGGTGCATG GCAGAAGTGACTCAGAGGCTAAGTAATGCCAAGGAAGCAGCTAGCAAACCTGCAGCATTTCATAGCCATGAGGATCTTGCCAGGAAGCTTCAGGAGGAGA TGGAGAAAAATCGCAAGTCGTCATCAGGATCCAAGTCCGATGTATCTGGGAGGCGGACGAGAGAAGTTGCCTGTCCAACTTGCACTGTCCATTTGCAGGT CCAGGTTCCCAGCTCAGGTTCTGAAACCATCGAGTGTGGAGTATGTCAACACCCATTTCTCGTCAGTGCTCACTGA
AA sequence Show only first row Show all	>Potri.005G242700.5 pacid=42805249 polypeptide=Potri.005G242700.5.p locus=Potri.005G242700 ID=Potri.005G242700.5.v4.1 annot-version=v4.1 MQHGDYSSYYQYPHLQNPNPNPNPPIDHHQTPYASAPPFSSGYTPSDYSIYPQNYPPYSQNPDPVPPPTAPTYTPTTPTTPNPNNPQSSFNPPPPPPPQQ PPYFPPYDSHGSYQPPTTQQSYLPSFDQHQTSPNYAPQPPPPNSAVAPNPTGATNSPYTSMYSAPYNPIGSSVPPVYDTPYENPVKFDQNFGYLEGYNRS RSDTGSDLYGKEPESRYDIGGGRDDGYGDGVYAYEGGKVEPYGARGTAPNSSTWAGFDDYGRSISFPSGKDNSVRSSSGSGSGKIVRAVPKVETQEDVKS GVQKFRVKILAESGGQGTMDVLCEIGLDGIRMLDPNTSRTLRIYPLENITRCDKMDSSTFAFWSKSSVDFEPRRIRLQSNSYTTNTLLDTVTAATVQLKE MGGGTRPSDTSKTTEQPTEKKKGFGDLMNLIKPGSEEKEHWVPDEAVSKCTSCRMDFGAFVRRHHCRNCGDIFCDKCTQGRIALTADENAQPVRVCDRCM AEVTQRLSNAKEAASKPAAFHSHEDLARKLQEEMEKNRKSSSGSKSDVSGRRTREVACPTCTVHLQVQVPSSGSETIECGVCQHPFLVSAH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20110			RING/FYVE/PHD zinc finger supe...		Potri.005G242700 [exp]	0	1
AT1G20110			RING/FYVE/PHD zinc finger supe...		Potri.002G018900 [exp]	1.00	0.8855
AT1G79090			unknown protein		Potri.001G457800 [exp]	3.46	0.8455
AT5G53180		ATPTB2	polypyrimidine tract-binding p...		Potri.015G020800 [exp]	4.24	0.8091
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Potri.013G123100 [exp]	6.32	0.8453
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.006G011701 [exp]	13.67	0.8200
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Potri.002G039900 [exp]	14.14	0.8452	APG9.1
AT5G01960			RING/U-box superfamily protein...		Potri.006G111800 [exp]	20.34	0.8332
AT5G02320	MYB	MYB3R-5, ATMYB3...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.006G085600 [exp]	21.35	0.7599	MYB211,Pt-MYB3.1
AT4G15240			Protein of unknown function (D...		Potri.017G039500 [exp]	22.58	0.8120
AT3G08020			PHD finger family protein (.1)		Potri.009G059500 [exp]	23.23	0.8215

Compare expression of checked genes

Potri.005G242700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.