Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75900 420 / 6e-147 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75880 405 / 4e-141 EXL1 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G75890 395 / 2e-137 EXL2 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G42170 391 / 2e-135 SGNH hydrolase-type esterase superfamily protein (.1) AT3G14820 369 / 5e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59406 351 / 5e-120 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58725 351 / 5e-120 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G43570 345 / 4e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20120 347 / 7e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58520 330 / 3e-112 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G018800 [exp] 583 / 0 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 290 / 5e-96 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 283 / 4e-93 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 277 / 6e-91 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G061900 [exp] 273 / 2e-89 AT5G45960 405 / 4e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.009G151000 [exp] 271 / 9e-89 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160100 [exp] 268 / 1e-87 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 269 / 3e-87 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G118300 [exp] 266 / 9e-87 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034540 [exp] 459 / 2e-162 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 458 / 4e-162 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 416 / 8e-146 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034541 [exp] 400 / 4e-139 AT1G75880 379 / 7e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10003719 [exp] 392 / 7e-136 AT1G75880 379 / 8e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10017279 [exp] 380 / 2e-131 AT3G14820 370 / 1e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013573 [exp] 373 / 1e-128 AT3G14820 367 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017278 [exp] 343 / 3e-117 AT1G75900 376 / 5e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028425 [exp] 343 / 1e-112 AT1G75900 333 / 8e-109 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026074 [exp] 332 / 3e-112 AT1G75900 339 / 3e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.005G242800.1 pacid=42803695 polypeptide=Potri.005G242800.1.p locus=Potri.005G242800 ID=Potri.005G242800.1.v4.1 annot-version=v4.1 ATGGAGTTTCTTTCATCGAGGCTAACAATAATGTCCTATTGTTTTTATTCTACGTCGGTGCTCTTTCTCACTGTTGTCTGCACCGTCAGTTCCTTGGTAA AGCTACCACCTAATGTAACTATTCCGGCCCTTCTGGTCTTTGGGGATTCCATCGTCGATGCAGGCAACAACAACGACCTTGAAACACTTGTCAAGAGCAA CTTTCCTCCCTACGGAAAGGATTTTGAAGGCGGGATTCCTACAGGAAGGTTCTGTAATGGAAAAATCCCGTCAGACATTATAGCTAAAGAATTGGGAATT AAGGACACATTACCAGCATATTTGGACCCAGCAGTTCTACCTCAAGATCTCATAACAGGAGTAACCTTTGCTTCAAGTGGCTCTGGCTTTGATCCCTTGA CACCCAAATTAGTGTCAGTCCTGTCGTTGTCAGATCAATTAGAACATTTCAAAGAATACATAGGGAAGCTGAAGGCGATAATTGGAGAGGAAAACACAAT TTTCACCATAAGGAATAGTCTATTTCTAGTAGTAGCAGGCAGCGATGACATTGCCAATACCTATTTTACTCTTCGTGCAAGGAAATTGCAATATGATGTT CCTGCTTACACAGATCTAATGGCTAACTCAGCTTCTAGTTTCGCGCAGGAATTATATGAACTTGGGGCAAGAAGGATTGTTGTTTTCAGCGCACCACCAG TTGGATGTGTACCATCGCAAAGGACTTTAGCAGGGGGAGCTGAAAGAGAGTGTGCAGAAAACTTCAACGAAGCAGCAAAGTTATTCAACTCCAAGTTGTC CAAGAAGTTGGATTCTCTTGGTAGCAGCCTGCCTAACAGCAGTCTTGTCTACATAGATGTCTACAATCTACTGCTCGATATCATTCAAAAACCCCAAAAA TATGGTTTTCAAGTTGCAGATAAAGGATGTTGCGGTACTGGGAATTTAGAGGTAGCTGTATTATGTAACCAGCATACTTCTGAGACATGTGCAGATGTTT CCGATTATGTATTTTGGGACAGCTACCATCCAACTGAAAAAGCTTATAAGGCACTCGTTTATCCTCTCCTTGGAAAATATCTGACCAAATTCTTCTGA
AA sequence Show only first row Show all	>Potri.005G242800.1 pacid=42803695 polypeptide=Potri.005G242800.1.p locus=Potri.005G242800 ID=Potri.005G242800.1.v4.1 annot-version=v4.1 MEFLSSRLTIMSYCFYSTSVLFLTVVCTVSSLVKLPPNVTIPALLVFGDSIVDAGNNNDLETLVKSNFPPYGKDFEGGIPTGRFCNGKIPSDIIAKELGI KDTLPAYLDPAVLPQDLITGVTFASSGSGFDPLTPKLVSVLSLSDQLEHFKEYIGKLKAIIGEENTIFTIRNSLFLVVAGSDDIANTYFTLRARKLQYDV PAYTDLMANSASSFAQELYELGARRIVVFSAPPVGCVPSQRTLAGGAERECAENFNEAAKLFNSKLSKKLDSLGSSLPNSSLVYIDVYNLLLDIIQKPQK YGFQVADKGCCGTGNLEVAVLCNQHTSETCADVSDYVFWDSYHPTEKAYKALVYPLLGKYLTKFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Potri.005G242800 [exp]	0	1
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.002G223200 [exp]	5.00	0.9954
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.006G243700 [exp]	7.74	0.9952	Pt-RD22.1
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.006G243600 [exp]	10.09	0.9951
AT3G26610			Pectin lyase-like superfamily ...		Potri.008G188300 [exp]	10.81	0.9726
AT3G49190			O-acyltransferase (WSD1-like) ...		Potri.007G139600 [exp]	12.72	0.9809
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.007G103800 [exp]	12.80	0.9949	GA20ox5
AT4G15630			Uncharacterised protein family...		Potri.008G205100 [exp]	12.96	0.9928
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Potri.014G180300 [exp]	13.34	0.9788	CER1.1
AT1G54820			Protein kinase superfamily pro...		Potri.005G036600 [exp]	16.73	0.9939
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Potri.001G234500 [exp]	17.00	0.9031

Compare expression of checked genes

Potri.005G242800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.