Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66100 108 / 2e-25 winged-helix DNA-binding transcription factor family protein (.1) AT4G35890 103 / 3e-23 winged-helix DNA-binding transcription factor family protein (.1) AT5G21160 100 / 3e-22 LA RNA-binding protein (.1.2.3) AT5G46250 58 / 6e-09 RNA-binding protein (.1.2.3) AT2G43970 57 / 1e-08 RNA-binding protein (.1.2) AT4G32720 50 / 2e-06 ATLA1 La protein 1 (.1.2) AT3G19090 48 / 1e-05 RNA-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G109400 [exp] 142 / 1e-36 AT4G35890 178 / 2e-49 winged-helix DNA-binding transcription factor family protein (.1) Potri.007G063600 [exp] 131 / 1e-32 AT4G35890 165 / 1e-44 winged-helix DNA-binding transcription factor family protein (.1) Potri.009G018100 [exp] 110 / 3e-25 AT5G21160 660 / 0.0 LA RNA-binding protein (.1.2.3) Potri.001G220100 [exp] 105 / 8e-24 AT5G21160 607 / 0.0 LA RNA-binding protein (.1.2.3) Potri.011G080700 [exp] 64 / 5e-11 AT5G46250 325 / 5e-109 RNA-binding protein (.1.2.3) Potri.017G007400 [exp] 63 / 2e-10 AT2G43970 306 / 2e-98 RNA-binding protein (.1.2) Potri.007G144800 [exp] 62 / 3e-10 AT2G43970 357 / 2e-117 RNA-binding protein (.1.2) Potri.018G037900 [exp] 48 / 1e-05 AT4G32720 382 / 6e-130 La protein 1 (.1.2) Potri.006G241800 [exp] 47 / 2e-05 AT4G32720 403 / 3e-138 La protein 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025953 [exp] 143 / 1e-37 AT4G35890 226 / 8e-69 winged-helix DNA-binding transcription factor family protein (.1) Lus10025951 [exp] 144 / 2e-37 AT4G35890 264 / 4e-82 winged-helix DNA-binding transcription factor family protein (.1) Lus10014254 [exp] 140 / 2e-36 AT4G35890 246 / 6e-76 winged-helix DNA-binding transcription factor family protein (.1) Lus10041277 [exp] 100 / 6e-22 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10037431 [exp] 85 / 5e-17 AT5G21160 643 / 0.0 LA RNA-binding protein (.1.2.3) Lus10025608 [exp] 59 / 8e-09 AT2G43970 332 / 2e-107 RNA-binding protein (.1.2) Lus10027080 [exp] 58 / 1e-08 AT2G43970 333 / 7e-108 RNA-binding protein (.1.2) Lus10023315 [exp] 56 / 3e-08 AT5G46250 331 / 4e-111 RNA-binding protein (.1.2.3) Lus10038494 [exp] 56 / 3e-08 AT5G46250 323 / 5e-108 RNA-binding protein (.1.2.3) Lus10012058 [exp] 53 / 5e-07 AT3G19090 427 / 2e-146 RNA-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF05383 [poplar] [flax] La La domain
Representative CDS sequence Show only first row Show all	>Potri.005G243600.1 pacid=42803474 polypeptide=Potri.005G243600.1.p locus=Potri.005G243600 ID=Potri.005G243600.1.v4.1 annot-version=v4.1 ATGGTTTACACGGTGGATTCATCAAATTCTCCACGATTTCCAAGGGACGGCGTGAGAAGTTCTCAAAGGAGAGAGAAGTCGTCATCTCCAAAATCAGAAA CCGTAAGCGGTGAGGCTGAATCGATCAATTCTATGCTGGAGCAATCGAATGATTGGGCGGCGATTGAGAGTTCGGACAGTAAAAAGGGCAATGCAGGTAA GGCAAAGAAGCCGGCCTGGAACAAACCAACATCGAATGGTGTAGCTGAGATTACTAGTCCTGTTATGGATGCAACTTCATGGCCTGCTTTATCTGAATCC ACTAAGCCTTCTCCAAAACCATCGCCTGCTGAATCATCCTCGAAGATTGTCTCTGATGGATCAATACCCACTTCTCAGGGACCGGTGATAGCGAATTCAC CTAAGAAGCAAGGTAATAGTAATGCAAAATCTATCTCGGCAACAAACCATACAATGCCAGTTCGGCAAAGGCCTGTGAGGCGTGGCAGTGGTGGTAGTAG TGGAAGTAGTTCAGGAGGTGGACATTCACAAAACAGTTTTACTCACCCTCCACCGCCGCCGCCGCCACCACCATTTCCTATATTTCCAATGCCTCCCAAT GGTTTTACTAATCTGGTACCAGCTATGCCAGATCAATCTCCCAGAGAAACTCTATACAGAGGGAATAACTGGGAACCTAGACCAATTGGGGGTTTTGTTC CTCCGCCGCCTGTGGTAAGTGAACACCGACGCCCCTCAAGAAGAGGCAACTTTGGCCAGCCACCTGGAGATGGTTCCCACCGTAATAATTATGTTGGCAG ACGTGAACAGGACCGTGGACATCATGGAAATTCAAGAGATGTTCATGTGCAGCAACAGAGAGCTCCTACAAGGGGCTTTCCTCGGCCTTCACCGCAAAAT AGTGGTACATTTATTCCTCCCCAGTCTGTGAGACCATTTGCAAATCCCATGGGTTATCATGATATGCTATTTATTCCGCCTCCAATAACCTTGGAACCTT ATCCGGTTGTGCCACACATGCAATCACCAACAATGCTGATGCCTATTCCTCAACCTCTACCTTTATTGTTACTAAATCAGATAGAATACTATTTCAGCGA TATGAATTTATCAAAAGATGGTTTCTTAAAGTCAAAGATGGATGATGAAGGTTGGGTTCCTATTACTTTAATAGCGGGCTTTAATCGAGTTAGGATTATG ACAAACAACATCCAGTTTATATTGGAGTGCTTGAGGACTTCAACTTTGCTTGAAGTACAGGATGACAAAGTGAGGAGGCGTAATGATTGGATGAATTGGC TGCCTAGTTCTACAATGCCTCGCACTGATTTGGGCTTTCAGTCCTCTGGTGTATCAAGTTCTGATACTCTGACAACATCGTTTCAAAAGATCTCAATGGA GGATGTGGCTGCTGACCAAGATAGCACAACAGCTAAGACATGTGAGTTAACTATCCAGGCAGGAATCTCTCATCAGGAGGGTGCTGCAGGCACCAGTTCA AGCTTTTGA
AA sequence Show only first row Show all	>Potri.005G243600.1 pacid=42803474 polypeptide=Potri.005G243600.1.p locus=Potri.005G243600 ID=Potri.005G243600.1.v4.1 annot-version=v4.1 MVYTVDSSNSPRFPRDGVRSSQRREKSSSPKSETVSGEAESINSMLEQSNDWAAIESSDSKKGNAGKAKKPAWNKPTSNGVAEITSPVMDATSWPALSES TKPSPKPSPAESSSKIVSDGSIPTSQGPVIANSPKKQGNSNAKSISATNHTMPVRQRPVRRGSGGSSGSSSGGGHSQNSFTHPPPPPPPPPFPIFPMPPN GFTNLVPAMPDQSPRETLYRGNNWEPRPIGGFVPPPPVVSEHRRPSRRGNFGQPPGDGSHRNNYVGRREQDRGHHGNSRDVHVQQQRAPTRGFPRPSPQN SGTFIPPQSVRPFANPMGYHDMLFIPPPITLEPYPVVPHMQSPTMLMPIPQPLPLLLLNQIEYYFSDMNLSKDGFLKSKMDDEGWVPITLIAGFNRVRIM TNNIQFILECLRTSTLLEVQDDKVRRRNDWMNWLPSSTMPRTDLGFQSSGVSSSDTLTTSFQKISMEDVAADQDSTTAKTCELTIQAGISHQEGAAGTSS SF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66100			winged-helix DNA-binding trans...		Potri.005G243600 [exp]	0	1
AT5G67530		ATPUB49	plant U-box 49 (.1)		Potri.005G148900 [exp]	1.00	0.8036
AT1G29350			Kinase-related protein of unkn...		Potri.011G078800 [exp]	4.00	0.7370
AT5G28850			Calcium-binding EF-hand family...		Potri.013G047300 [exp]	7.74	0.6622
AT3G11450			DnaJ domain ;Myb-like DNA-bind...		Potri.003G190000 [exp]	9.74	0.6856
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Potri.016G000200 [exp]	11.22	0.6192
AT1G09810		ECT11	evolutionarily conserved C-ter...		Potri.004G223800 [exp]	13.30	0.7025
AT1G72090			Methylthiotransferase (.1)		Potri.013G107800 [exp]	14.38	0.6731
AT4G18905			Transducin/WD40 repeat-like su...		Potri.007G019601 [exp]	14.49	0.6709
AT1G24267			Protein of unknown function (D...		Potri.003G169200 [exp]	21.42	0.6314
AT5G63110		RPD3B, CAT1, AX...	RNA-MEDIATED TRANSCRIPTIONAL S...		Potri.015G082500 [exp]	22.24	0.5908

Compare expression of checked genes

Potri.005G243600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.