Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20180 252 / 2e-80 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) AT3G49070 89 / 3e-19 Protein of unknown function (DUF677) (.1) AT3G19330 59 / 2e-09 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) AT3G19250 54 / 6e-08 Protein of unknown function (DUF677) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G018200 [exp] 590 / 0 AT1G20180 288 / 2e-94 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.002G067300 [exp] 170 / 3e-49 AT1G20180 130 / 2e-34 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.005G193000 [exp] 167 / 4e-48 AT1G20180 155 / 8e-44 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.015G147400 [exp] 104 / 7e-25 AT3G49070 253 / 1e-80 Protein of unknown function (DUF677) (.1) Potri.010G240200 [exp] 67 / 5e-12 AT3G19330 311 / 9e-104 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017286 [exp] 280 / 2e-91 AT1G20180 265 / 1e-85 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10005612 [exp] 275 / 2e-89 AT1G20180 268 / 1e-86 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10010144 [exp] 256 / 3e-81 AT1G20180 260 / 4e-83 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10017348 [exp] 253 / 5e-80 AT1G20180 255 / 4e-81 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10031977 [exp] 81 / 2e-16 AT3G19330 284 / 2e-93 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Lus10039258 [exp] 59 / 6e-10 AT3G49070 168 / 1e-50 Protein of unknown function (DUF677) (.1) Lus10027501 [exp] 56 / 2e-08 AT3G49070 98 / 2e-23 Protein of unknown function (DUF677) (.1) Lus10035125 [exp] 50 / 9e-07 AT3G19330 183 / 1e-56 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Lus10028573 [exp] 49 / 2e-06 AT3G49070 102 / 4e-25 Protein of unknown function (DUF677) (.1) Lus10018879 [exp] 43 / 2e-05 AT3G49070 56 / 2e-10 Protein of unknown function (DUF677) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF05055 [poplar] [flax] DUF677 Protein of unknown function (DUF677)
Representative CDS sequence Show only first row Show all	>Potri.005G243800.1 pacid=42804609 polypeptide=Potri.005G243800.1.p locus=Potri.005G243800 ID=Potri.005G243800.1.v4.1 annot-version=v4.1 ATGACAAAGCTTTTGTGGGCTAAGTTAAAATCTACCTTTTCAAGGGCAGGAGGATCTCCCAAGGAACGAGCTAGCAGCTTAAGCAACAAGTTGAACGTTA ATGAAGAATACAAGGAAGCTTTCAGGACGAAGTCTTATGTGGAAATGTGGAGCAAGGTTCAGGACCAGCTAAGAAAAACACGCGTTGATGGAGTTGACAA AGTCACCTCACCGTCCTCATCTCTTCCTTTCTATCCCCATCTCTCTGATTATTTGTTTGAACCACAGCAGCAAGCGACCCTGGGAGAGATGATAGAAAGC TTGAGGTTTCATCACTTTCTGATTGATTACTTTGAAGCCAGATCAGAAGCATGTCATATTTGCGGTTTGCTTCTTCAATGCATCCAGCAAACACGTGCTA ATTATAAGAAAATTAGAAGGGTAATCAAGTTAAGCAAAAGGGTGCAAGATTCTGCAGATTATTCAGATAAGATTTGCATCGCAATGTTTAGAGAGCTTGC TGCGTATGCATTGCTTGAAAATCCATTATCGATGTTTTCTACCACTGTAAAATTCAATGATTTTCATGATAACAACTTGGTGTTGCTCCACGGATTGAAT TCAGAACAGAGAAAGATTATGAGGAAAGCAAAGTTCAGAAGGATATGCATGAAGGTTGCAGGAGGGTGTCTTGTCATATCACATACTGCACTTCTAATTG CCTTGCTTGTAATTGCAACCCATGGCATAGTTGGCATTGTGGCTGCACCAGGAATAATGGGTTGCTCGTTGTATGTATTCAGAAAGCAAATCAAGTTGGT TCATCGGGGGCTTGAGACAAGCTTGCTTGAAAAAAGACTTGGTGCACAACTAGATCTTGCAGCCAAAGGAACTTACATATTGATCAAAGATTTTGATACC ATGAGTAGACTCGTGAGGAGGTTATTCGATGAGGTAGAACGCCGTAAAGCTCTTGCTGATATGTGTGTAAGGAATAAAAAACCTGAACTGTTGAAAGAGG TCGTGAAAGAATTTCACACTCACGACTTGTGCTATCTGGAGCAGCTAGAAGAACTCGAGCAACACATCTACCTGTGTTTTCATACCATAAATAGATCCAG AAGGCTTGTTATGGACGAGATAATGGCTGCACCCGAGAATAGTAGAGCTGATGATCATCAACAAAAGATCTTACAAGGATGA
AA sequence Show only first row Show all	>Potri.005G243800.1 pacid=42804609 polypeptide=Potri.005G243800.1.p locus=Potri.005G243800 ID=Potri.005G243800.1.v4.1 annot-version=v4.1 MTKLLWAKLKSTFSRAGGSPKERASSLSNKLNVNEEYKEAFRTKSYVEMWSKVQDQLRKTRVDGVDKVTSPSSSLPFYPHLSDYLFEPQQQATLGEMIES LRFHHFLIDYFEARSEACHICGLLLQCIQQTRANYKKIRRVIKLSKRVQDSADYSDKICIAMFRELAAYALLENPLSMFSTTVKFNDFHDNNLVLLHGLN SEQRKIMRKAKFRRICMKVAGGCLVISHTALLIALLVIATHGIVGIVAAPGIMGCSLYVFRKQIKLVHRGLETSLLEKRLGAQLDLAAKGTYILIKDFDT MSRLVRRLFDEVERRKALADMCVRNKKPELLKEVVKEFHTHDLCYLEQLEELEQHIYLCFHTINRSRRLVMDEIMAAPENSRADDHQQKILQG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20180			Protein of unknown function (D...		Potri.005G243800 [exp]	0	1
AT2G43330		ATINT1	inositol transporter 1 (.1)		Potri.007G126800 [exp]	2.00	0.6371
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G045800 [exp]	4.24	0.6589
AT4G25390			Protein kinase superfamily pro...		Potri.012G131900 [exp]	10.19	0.6129
AT4G36750			Quinone reductase family prote...		Potri.007G029600 [exp]	34.78	0.6246
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Potri.006G140300 [exp]	51.49	0.5599
					Potri.008G030801 [exp]	52.23	0.5678
					Potri.010G094250 [exp]	80.64	0.5891
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Potri.009G131900 [exp]	82.61	0.5539
AT3G22490			Seed maturation protein (.1)		Potri.005G048000 [exp]	87.87	0.5858	Pt-PM24.1
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Potri.010G072900 [exp]	126.89	0.5194

Compare expression of checked genes

Potri.005G243800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.