Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATEXPA11.1,PtrEXPA18
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20190 404 / 3e-144 ATHEXPALPHA1.14, ATEXP11, ATEXPA11 EXPANSIN 11, expansin 11 (.1) AT4G01630 336 / 2e-117 ATEXP17, ATHEXPALPHA1.13, ATEXPA17 EXPANSIN 17, expansin A17 (.1) AT1G69530 336 / 4e-117 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT2G40610 328 / 2e-114 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT5G05290 327 / 9e-114 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G03090 321 / 1e-111 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT2G37640 316 / 2e-109 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT2G39700 315 / 6e-109 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT3G55500 312 / 5e-108 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT5G56320 310 / 3e-107 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G017900 [exp] 500 / 0 AT1G20190 408 / 9e-146 EXPANSIN 11, expansin 11 (.1) Potri.002G184700 [exp] 349 / 2e-122 AT4G01630 394 / 4e-140 EXPANSIN 17, expansin A17 (.1) Potri.019G057500 [exp] 342 / 8e-120 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.016G135200 [exp] 342 / 1e-119 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.006G108000 [exp] 340 / 5e-119 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.008G088300 [exp] 324 / 8e-113 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.001G001100 [exp] 324 / 8e-113 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.010G167200 [exp] 324 / 2e-112 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.001G240900 [exp] 321 / 2e-111 AT2G39700 449 / 6e-162 expansin A4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034548 [exp] 434 / 4e-156 AT1G20190 400 / 1e-142 EXPANSIN 11, expansin 11 (.1) Lus10021845 [exp] 432 / 2e-155 AT1G20190 397 / 1e-141 EXPANSIN 11, expansin 11 (.1) Lus10017256 [exp] 423 / 9e-152 AT1G20190 378 / 5e-134 EXPANSIN 11, expansin 11 (.1) Lus10034227 [exp] 326 / 2e-113 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10042214 [exp] 322 / 1e-111 AT2G40610 393 / 7e-140 expansin A8 (.1) Lus10009253 [exp] 322 / 1e-111 AT4G01630 405 / 1e-144 EXPANSIN 17, expansin A17 (.1) Lus10038013 [exp] 321 / 2e-111 AT4G01630 405 / 1e-144 EXPANSIN 17, expansin A17 (.1) Lus10016533 [exp] 321 / 3e-111 AT2G39700 456 / 9e-165 expansin A4 (.1) Lus10036763 [exp] 320 / 6e-111 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10040801 [exp] 320 / 9e-111 AT2G39700 456 / 1e-164 expansin A4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.005G244100.1 pacid=42805460 polypeptide=Potri.005G244100.1.p locus=Potri.005G244100 ID=Potri.005G244100.1.v4.1 annot-version=v4.1 ATGGGGAAATTTCTTTTGACATTTGCAATCTTGCTTCAGTTCTGCTCTTATTTGGCTATCAATGTTAATGCGTTTGCTCCATCTGGGTGGAGGAAAGGTC ATGCTACATTTTATGGAGGCAGTGACGCCTCAGGAACTATGGGAGGGGCTTGTGGATATGGAAACTTGTATTCTACTGGTTATGGGACCAGGACCGCTGC TTTAAGCACTGCTTTATTCAATGATGGAGCTTCATGTGGGGAATGTTACAGAATAATGTGTGATTTTCAAACAGACCCCAGATGGTGCATTAAAGGCAAG TCTGTGACCATTACTGCAACAAATTTCTGCCCCCCTAATTATGCTCTTCCAAACAACAATGGAGGCTGGTGCAACCCTCCTCTCCAGCACTTTGATATGG CTCAGCCTGCTTGGGAAAAGATTGGTATTTATAGAGGAGGAATCGTGCCTGTTTTGTTTCAAAGGGTTCCTTGCAAGAAGCATGGAGGAGTCAGATTCAC CATTAATGGAAGAAACTACTTCGAGCTTGTCTTGATTAGCAATGTGGCTGGAGCTGGATCCATTCAATCTGTGTCCATTAAAGGCTCAAAAACAGGCTGG ATGGCAATGTCAAGAAATTGGGGAGCTAACTGGCAATCTAATGCTTATCTCAATGGCCAGTCTTTGTCCTTTAAAATCACAAATACTGATGGACAGACCC GATTCTTCACGGACATTGCTCCAGCAAATTGGGGATTTGGCCAGACTTTCTCTAGTTCAGTACAGTTCTAA
AA sequence Show only first row Show all	>Potri.005G244100.1 pacid=42805460 polypeptide=Potri.005G244100.1.p locus=Potri.005G244100 ID=Potri.005G244100.1.v4.1 annot-version=v4.1 MGKFLLTFAILLQFCSYLAINVNAFAPSGWRKGHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGECYRIMCDFQTDPRWCIKGK SVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRNYFELVLISNVAGAGSIQSVSIKGSKTGW MAMSRNWGANWQSNAYLNGQSLSFKITNTDGQTRFFTDIAPANWGFGQTFSSSVQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Potri.005G244100 [exp]	0	1	Pt-ATEXPA11.1,PtrEXPA18
AT4G19980			unknown protein		Potri.003G110200 [exp]	3.87	0.8732
AT2G17080			Arabidopsis protein of unknown...		Potri.005G249000 [exp]	4.24	0.9212
AT1G07300			josephin protein-related (.1)		Potri.001G249500 [exp]	7.93	0.8832
AT1G67050			unknown protein		Potri.017G115801 [exp]	8.66	0.8989
					Potri.001G388100 [exp]	9.21	0.8942
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.001G457000 [exp]	10.00	0.8782	Pt-HMGR3.1
AT5G62420			NAD(P)-linked oxidoreductase s...		Potri.001G125400 [exp]	10.67	0.8510
AT1G45688			unknown protein		Potri.007G045000 [exp]	12.72	0.8595
AT4G00820		IQD17	IQ-domain 17 (.1)		Potri.011G153400 [exp]	13.11	0.8503
AT5G35550	MYB	ATTT2, TT2, AtM...	TRANSPARENT TESTA 2, MYB DOMAI...		Potri.006G221500 [exp]	15.65	0.8465	MYB183

Compare expression of checked genes

Potri.005G244100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.