Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60420 300 / 3e-96 DC1 domain-containing protein (.1) AT4G31240 260 / 3e-83 protein kinase C-like zinc finger protein (.1.2) AT2G44380 49 / 2e-06 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G40590 42 / 0.0006 Cysteine/Histidine-rich C1 domain family protein (.1) AT1G67790 42 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G017200 [exp] 711 / 0 AT1G60420 303 / 3e-97 DC1 domain-containing protein (.1) Potri.010G059900 [exp] 276 / 2e-87 AT1G60420 652 / 0.0 DC1 domain-containing protein (.1) Potri.010G060200 [exp] 276 / 3e-87 AT1G60420 679 / 0.0 DC1 domain-containing protein (.1) Potri.010G059700 [exp] 275 / 1e-86 AT1G60420 680 / 0.0 DC1 domain-containing protein (.1) Potri.006G279400 [exp] 269 / 2e-86 AT4G31240 542 / 0.0 protein kinase C-like zinc finger protein (.1.2) Potri.010G059600 [exp] 272 / 8e-86 AT1G60420 666 / 0.0 DC1 domain-containing protein (.1) Potri.010G059550 [exp] 267 / 6e-84 AT1G60420 658 / 0.0 DC1 domain-containing protein (.1) Potri.010G059401 [exp] 266 / 1e-83 AT1G60420 667 / 0.0 DC1 domain-containing protein (.1) Potri.010G060300 [exp] 259 / 5e-82 AT1G60420 560 / 0.0 DC1 domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017252 [exp] 551 / 0 AT1G60420 311 / 1e-100 DC1 domain-containing protein (.1) Lus10005618 [exp] 540 / 0 AT1G60420 300 / 2e-96 DC1 domain-containing protein (.1) Lus10013017 [exp] 288 / 1e-91 AT1G60420 624 / 0.0 DC1 domain-containing protein (.1) Lus10029148 [exp] 57 / 1e-09 AT1G60420 121 / 5e-33 DC1 domain-containing protein (.1) Lus10000548 [exp] 47 / 2e-05 AT3G01680 677 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022305 [exp] 47 / 2e-05 AT3G01680 744 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10032103 [exp] 44 / 0.0002 AT3G01680 757 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10014580 [exp] 44 / 0.0003 AT3G01680 758 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF13905 [poplar] [flax] Thioredoxin_8 Thioredoxin-like
Representative CDS sequence Show only first row Show all	>Potri.005G244700.1 pacid=42804012 polypeptide=Potri.005G244700.1.p locus=Potri.005G244700 ID=Potri.005G244700.1.v4.1 annot-version=v4.1 ATGAACTTGGAGGAAAATTCCAGGAAGCTTCAAGCTAGTAAAGCTGAAGCAAACGGCGACTCTCACAGAATCTCAAGCTCAAGATTTTCATCACTTCTGG CCTCGAAAGATCGTGATTATCTTCTTTCCCAAGATGGAACTCAGGTGAAAGTTTCTGATCTTGAAGGCAAGGTGCTTGGCCTTTACTTCTCTGCCAACTG GTACGCGCCATGTCGAAGCTTCACCTCCCAAGTCTTAATTGGTGCATATCAGGATTTGAAGAGCAATGGATCTAATTTCGAAATTGTCTTCGTGTCGTCT GATGAGGACTTGGATGCCTTCAACAATTATCGTGCCAACATGCCATGGCTGTCCATTCCATTTTCAGATTTGGAGACCAAAAAAGCCTTAAATAGTAAAT TTGACGTTGAAGCAATTCCTTGTCTCGTCATCTTGCATCCTAAGGATAACAAAGATGAGGCAACGTTACATGACGGGGTCGAGCTCCTTCACCGGTTCGG AGTCCAGGCTTTCCCATTTACCAAAGAGAGGCTGGAGGAATTAAAATTGGAAGAGAAGGAGAAGCATGAGAGGCAGACCCTAACCAATTTGCTGATTTGC CATAATAGAGACTATCTTTTGGGTCATCCCGCACCTAGACAGGTGCCTGTTGCCTCATTGGTAGGCAAAACAATCGGACTGTATTTCTCATCCCATTGGT GTCTTCCAGGCGGGAAGTTTACTCCCAAGCTGATATCCATCTACCAAAAGATTAAGCAAATGCTGGTAAACAAAGGAAATGATGACGACTTTGAAATTGT GTTTGTGTCAAGTGATCGCGATCAAGCTGAATTCGACTCCTACTTCAATAGCATGCCATGGCTAGCATTGCCTTTCGGAGATCCTGCCAACAAAACCCTT GCTAAGCACTTTGATGTAAAAGGCATCCCTTGCTTGGTAATTTTAGGTCCTGATGGTAAAACTGTCAGTAAACATGGGAGAAACCTAATTAACTTGTACC AAGAAAATGCGTACCCTTTTACCGAGGCCCAAGTGGATTTACTGGAGAAACAAATGGACGAGGAGGCTCAAAGCCTACCAAGATCAAAGAACCATGCAGG GCATCGACATGAACTAACCTTGGTTTCAGAAGGAACTGGAGGAGGACCGTTTATATGCTGTGATTGTGATGAACAAGGTTCAGGATGGGCTTATCAGTGC CTTGAATGTGGATACGAGGTGCATCCCAAGTGTGTTAGAGCTGTGGACCGTGGCTCCATGGCTGAGAGCTGA
AA sequence Show only first row Show all	>Potri.005G244700.1 pacid=42804012 polypeptide=Potri.005G244700.1.p locus=Potri.005G244700 ID=Potri.005G244700.1.v4.1 annot-version=v4.1 MNLEENSRKLQASKAEANGDSHRISSSRFSSLLASKDRDYLLSQDGTQVKVSDLEGKVLGLYFSANWYAPCRSFTSQVLIGAYQDLKSNGSNFEIVFVSS DEDLDAFNNYRANMPWLSIPFSDLETKKALNSKFDVEAIPCLVILHPKDNKDEATLHDGVELLHRFGVQAFPFTKERLEELKLEEKEKHERQTLTNLLIC HNRDYLLGHPAPRQVPVASLVGKTIGLYFSSHWCLPGGKFTPKLISIYQKIKQMLVNKGNDDDFEIVFVSSDRDQAEFDSYFNSMPWLALPFGDPANKTL AKHFDVKGIPCLVILGPDGKTVSKHGRNLINLYQENAYPFTEAQVDLLEKQMDEEAQSLPRSKNHAGHRHELTLVSEGTGGGPFICCDCDEQGSGWAYQC LECGYEVHPKCVRAVDRGSMAES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60420			DC1 domain-containing protein ...		Potri.005G244700 [exp]	0	1
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Potri.009G037300 [exp]	1.41	0.9003
AT2G21820			unknown protein		Potri.010G176200 [exp]	2.44	0.8191	PM41.1
AT5G50360			unknown protein		Potri.012G094400 [exp]	3.16	0.8789
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Potri.012G002700 [exp]	3.46	0.8710
AT1G45249	bZIP	AtABF2, ATAREB1...	ABSCISIC ACID RESPONSIVE ELEME...		Potri.014G028200 [exp]	5.00	0.8629	Pt-ABF2.1
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Potri.008G059200 [exp]	5.91	0.8150
AT1G60420			DC1 domain-containing protein ...		Potri.002G017200 [exp]	6.00	0.8681
AT2G39020			Acyl-CoA N-acyltransferases (N...		Potri.010G224800 [exp]	6.92	0.8104
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Potri.015G018800 [exp]	8.48	0.7832
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Potri.002G074700 [exp]	12.96	0.7148

Compare expression of checked genes

Potri.005G244700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.