Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35840 132 / 3e-38 RING/U-box superfamily protein (.1) AT5G66070 132 / 5e-38 RING/U-box superfamily protein (.1.2) AT2G17730 130 / 2e-37 NIP2 NEP-interacting protein 2 (.1.2) AT1G74410 81 / 2e-18 RING/U-box superfamily protein (.1) AT3G20395 71 / 6e-15 RING/U-box superfamily protein (.1) AT1G21960 61 / 3e-11 RING/U-box superfamily protein (.1) AT3G10910 60 / 4e-11 RING/U-box superfamily protein (.1) AT5G05280 60 / 4e-11 RING/U-box superfamily protein (.1) AT3G16720 61 / 1e-10 ATL2 TOXICOS EN LEVADURA 2 (.1) AT2G25409 58 / 1e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108200 [exp] 141 / 2e-41 AT4G35840 369 / 7e-131 RING/U-box superfamily protein (.1) Potri.007G061400 [exp] 124 / 6e-35 AT2G17730 351 / 8e-124 NEP-interacting protein 2 (.1.2) Potri.001G435800 [exp] 70 / 2e-14 AT3G20395 153 / 4e-46 RING/U-box superfamily protein (.1) Potri.005G244900 [exp] 68 / 3e-14 AT5G66070 79 / 1e-18 RING/U-box superfamily protein (.1.2) Potri.013G157000 [exp] 62 / 6e-12 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1) Potri.016G136200 [exp] 62 / 6e-12 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.010G245801 [exp] 62 / 8e-12 AT2G27940 61 / 1e-11 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 60 / 5e-11 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.006G144200 [exp] 59 / 1e-10 AT5G17600 90 / 3e-21 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028406 [exp] 144 / 2e-42 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10041859 [exp] 144 / 2e-42 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10021524 [exp] 76 / 2e-16 AT3G20395 170 / 7e-53 RING/U-box superfamily protein (.1) Lus10001654 [exp] 70 / 2e-14 AT1G74410 251 / 1e-84 RING/U-box superfamily protein (.1) Lus10024405 [exp] 64 / 1e-12 AT4G17905 95 / 9e-24 RING/U-box superfamily protein (.1) Lus10021628 [exp] 62 / 1e-11 AT1G74410 250 / 5e-84 RING/U-box superfamily protein (.1) Lus10025338 [exp] 61 / 2e-11 AT4G17905 99 / 4e-25 RING/U-box superfamily protein (.1) Lus10029037 [exp] 60 / 5e-11 AT3G10910 166 / 9e-53 RING/U-box superfamily protein (.1) Lus10020859 [exp] 60 / 1e-10 AT1G49230 230 / 3e-76 RING/U-box superfamily protein (.1) Lus10005815 [exp] 59 / 2e-10 AT1G49230 170 / 3e-53 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.005G244800.2 pacid=42803949 polypeptide=Potri.005G244800.2.p locus=Potri.005G244800 ID=Potri.005G244800.2.v4.1 annot-version=v4.1 ATGTCCGGTGGCCTTGTTACTAGTTTAATCGCTAGACATAAGCTCATGAAGATCGTATACAACTGCCCATCATCTTGCTCTGCTTCTTCTTTAGCGTTTT GGGTTTCTGCCAAGGTTTATGCAATTGCGTGCAAGCTATTCTGTGCGATCTTGACGTTCGTGTTTGCAGTAGCTGGCACAACATTGGGAGCCTATGCTGG AGCAGTTGTGGGCCTAAAGTCTAAAAGTAGCTTACTTCATGGAGCCGCAGTTGGAGCCATCATGGGGTGCATACTTTCCTTTGAAATTTTTAGAAAATCA TTCGTTCTCTGGGATTCTGATGATTGGGCAATTGACACCTTCATTCATTTCATTCAAACAGGTTCAAACATCTTGAATGAAAGAATAGAAAGGCTTAGTT CAACCACAATTTGCAGCAATGGATTATCGATGCTGAAAATTCAAAATAAGAGACTTGCAAACAAAAACTTTGTGGATACCTTATGGAATGGACCTTCCTG CCCAATCTGCCTACAGGACTTCCAACTGGGGGAAATGGTTTGCAGCTTGCCGGGGTGCCGCCACACATTTCATCCACGTTGTATTGGTCAGTGGTTTATT GGACACAGTTCTTGCCCATTTTGCAGGGAAATACCATTTTTGGTGGAGAATGTGGATTGTGCTAGTTAA
AA sequence Show only first row Show all	>Potri.005G244800.2 pacid=42803949 polypeptide=Potri.005G244800.2.p locus=Potri.005G244800 ID=Potri.005G244800.2.v4.1 annot-version=v4.1 MSGGLVTSLIARHKLMKIVYNCPSSCSASSLAFWVSAKVYAIACKLFCAILTFVFAVAGTTLGAYAGAVVGLKSKSSLLHGAAVGAIMGCILSFEIFRKS FVLWDSDDWAIDTFIHFIQTGSNILNERIERLSSTTICSNGLSMLKIQNKRLANKNFVDTLWNGPSCPICLQDFQLGEMVCSLPGCRHTFHPRCIGQWFI GHSSCPFCREIPFLVENVDCAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35840			RING/U-box superfamily protein...		Potri.005G244800 [exp]	0	1
					Potri.012G121504 [exp]	3.46	0.8947
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Potri.005G103200 [exp]	5.29	0.8946
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G012700 [exp]	6.16	0.9085
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G012601 [exp]	6.48	0.9081
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.005G085200 [exp]	9.48	0.8648	WRKY51.1
AT3G46400			Leucine-rich repeat protein ki...		Potri.012G002900 [exp]	9.79	0.8899
AT3G50940			P-loop containing nucleoside t...		Potri.011G111200 [exp]	10.48	0.8065
AT3G48090		ATEDS1, EDS1	enhanced disease susceptibilit...		Potri.015G069600 [exp]	11.40	0.8965	EDS1.2
					Potri.001G078000 [exp]	12.00	0.8728
					Potri.019G110602 [exp]	12.64	0.8528

Compare expression of checked genes

Potri.005G244800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.