Plant FIBer expression Database

TIF3.9 (Potri.005G245100) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol TIF3.9
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56150 1080 / 0 ATTIF3C1, ATEIF3C-1, TIF3C1, EIF3C eukaryotic translation initiation factor 3C (.1.2)
AT3G22860 891 / 0 ATTIF3C2, ATEIF3C-2, TIF3C2 EUKARYOTIC INITIATION FACTOR 3C-2, eukaryotic translation initiation factor 3 subunit C2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G016900
[exp]
1395 / 0 AT3G56150 1095 / 0.0 eukaryotic translation initiation factor 3C (.1.2)
Potri.016G063500
[exp]
1367 / 0 AT3G56150 1017 / 0.0 eukaryotic translation initiation factor 3C (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039984
[exp]
1170 / 0 AT3G56150 1176 / 0.0 eukaryotic translation initiation factor 3C (.1.2)
Lus10027702
[exp]
1162 / 0 AT3G56150 1188 / 0.0 eukaryotic translation initiation factor 3C (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF01399 PCI PCI domain
Representative CDS sequence
>Potri.005G245100.4 pacid=42805590 polypeptide=Potri.005G245100.4.p locus=Potri.005G245100 ID=Potri.005G245100.4.v4.1 annot-version=v4.1
ATGGCTTCGCGTTTCTGGGGACAGGGTGATAGCGAATCTGATGAGGAGAGTGATTATGGAGATGAGATTGAGGATGGAGAAGCTGACGAGCCTACTGCCC
AAACTGCTGAGAACAAATATCTTAGAGGAACTGCTAGCGATAGCGATGAGTCTGATGATCAAAAGCGTGTGGTAAGGTCAGCCAAAGACAAGCGTTTTGA
GGAGATGTCAGCCACTGTTGATCAAATGAAGAATGCAATCAAGATTAATGATTGGGTCAGCTTGCAGGAGAGCTTTGATAAGATGAATAAGCAACTTGAG
AAAGTCATGAGAGTGATGGAATCAGAGAAGGTTCCCACGCTTTACATTAAAGCTCTGGTAATGCTGGAAGATTTCTTGAATCAGGCTTTGGCGAATAAGG
AAGCTAAAAAGAAAATGAGCAGCAGTAATGCCAAGGCCTTGAATGCAATGAAGCAGAAATTGAAGAAAAACAATAAACAATATGAAGATCAGATTAATAT
ATATAGGGAACATCCTGAAAGTGAGGAAGAACCAGAGGCTGATGAGGAGTCAGAAGAGGAGGAAGAGTCTGATTTGGAGTTCGAGGAGGACCCTTCAAAG
ATTGTAATATCCGATGAGGAGGAGGGTGTCAATGACCAATCTGAAAAGGATGGGGGCTGGGAGAAGATGATGAGTAAGAAAGATAAGCTCATGGATAAGC
AGTTTGCAAAAGATCCTAGTGAAATCACCTGGGATATTGTAAACAAGAAATTTAAAGAAATTGTTGCTGCCCGGGGTAGGAGGGGAACTGGAAGGTTTGA
GCAGGTTGAACAGCTAACTTTCCTGACGAAAGTTGCTAAGACCCCTGCACAGAAGTTGGAAATTCTTTTTAGTGTGGTCTCTGCACAGTTTGATGTGAAT
CCTGGTCTCAGTGGGCACATGCCTATACATGTCTGGAAAAATTGTGTGCAGAACATGCTGGTTATTCTTGACATTCTGGTACAGTATCCTAATATTGTAG
TGGACGACACAGTTGAACCTGATGAGAATGAAACCCAGAAAGGAGCAGACCATAATGGGCCGATTCAGATTTGGGGAAACTTAGTGGCATTTCTTGAGAG
AATGGATATTGAGTTCTTTAAGAGTTTGCAGTGCATTGATCCGCATGCACGTGAGTACATTGAGAGACTGCAGGATGAACCTATGTTTTTAGTTCTTGCT
CAGAATGTCCAAGAATATCTAGAGCGTGTTGGAGATCTTAAAGCTGCAGCAAAGGTTGCCTTAAGACGTGTTGAGCTGATCTATTACAAACCACAAGAGG
TTTATGATGCTATGAGAAAGTTGGCTGAACAGACAGAAGATGGAGGCAATGGTGAGGAGCCTAAGGTTGAGGAAAGTAGGGGTTCCTCTGCATTTGTTAA
TACTCCGGAGCTTGTGCCTCGAAAGCCTACCTTTCCTGAGAATAGCAGGACAATGATGGATGCTTTAGTCTCCCTCATTTACAAGTCTGGAGATGAGCGG
ACCAAAGCTCGTGCAATGCTCTGTGATATCTACCACCATGCTCTCCTGGATGAGTTCGCAACCTCCCGTGACCTGCTATTGATGAGTCACCTGCAAGATA
ATATTCAGCACATGGACATTTCAAGCCAGATACTTTTCAACAGGGCTATGGCACAACTTGGTTTATGTGCATTCCGTGTTGGTCTAATCACTGAAGCACA
TGGATGTCTTTCTGAATTATATTCTGGTGGAAGGGTGAAGGAGTTGCTTGCACAAGGTTTTTCACAAAGCCGATATTATGAAAAAACTCCGGAACAGGAA
AGACTGGAAAGGAGACGCCAGATGCCATATCATATGCACATAAATCTTGAACTTCTGGAGTCTGTCCATCTCAGTTGTGCAATGCTGCTGGAGGTCCCCA
GCATGGCAGCCAATGTTCTTGATGATAAGCGCAAGGTCATTAGCAAGACATTTAGGCGGCTGCTTGATGTAAGTGAGAGGCAAACTTTCACTGGTCCTCC
TGAAAATGTAAGGGACCATGTAATGGCTGCTACACGGGCACTTAGGAAAGGAGATTTCCAGAAGGCATTTGATGTTATCGAGTCTCTTGATGTCTGGAAG
CTCCTCAGAAATAGAGATGGTGTTCTTGGGATGCTTAAAGCCAAGATTAAGGAAGAAGCTCTGAGGACCTACCTGTTTTCGTACACCTCCTCCTATGATT
CGCTTGGCTTGGACCAGTTGACCAAAATGTTTGACCTTTCAGCAGCTGAGACTAAAGTCATTGTCAGTAAAATGATGATCAATGACGAGCTCCAAGCAAG
CTGGGACCAGCCAACACAATGTATTGTATTCCATGATCTTGAGCAAACAAGGTTGCAGGCTTTGGCGTTCCAGTTGACAGAGAAGCTTTCAATCCTTGCT
GAAAGTAATGAAAGGGCAATAGAAGCAAAAATTGGCGGTGGCGGTTTGGATCTGCCTCAGAGACGGAGGGATGGCCAGGATTTTGCTAACCTGGCTGCTT
CAGGTGTTAAGTGGCATGAAAACTCATCTTTCACTCATGGAAGGCAAGGTTCTGGACGTTCTGGATATGGTGGTGGTGGTGGTGGTGGGAGGCCACAGGT
TTTAGGCCAGGCTTTCGGGACTAGCTATTCGAAGGGGGCAAGCAATTTGCGAGCTGGAGGTGGATATTCTGGAGGCTCTCGATATCAAGATGCTCCAACT
CGCATGGTTACTCTTAATAAGGGAGCTCGTGCTTGA
AA sequence
>Potri.005G245100.4 pacid=42805590 polypeptide=Potri.005G245100.4.p locus=Potri.005G245100 ID=Potri.005G245100.4.v4.1 annot-version=v4.1
MASRFWGQGDSESDEESDYGDEIEDGEADEPTAQTAENKYLRGTASDSDESDDQKRVVRSAKDKRFEEMSATVDQMKNAIKINDWVSLQESFDKMNKQLE
KVMRVMESEKVPTLYIKALVMLEDFLNQALANKEAKKKMSSSNAKALNAMKQKLKKNNKQYEDQINIYREHPESEEEPEADEESEEEEESDLEFEEDPSK
IVISDEEEGVNDQSEKDGGWEKMMSKKDKLMDKQFAKDPSEITWDIVNKKFKEIVAARGRRGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVN
PGLSGHMPIHVWKNCVQNMLVILDILVQYPNIVVDDTVEPDENETQKGADHNGPIQIWGNLVAFLERMDIEFFKSLQCIDPHAREYIERLQDEPMFLVLA
QNVQEYLERVGDLKAAAKVALRRVELIYYKPQEVYDAMRKLAEQTEDGGNGEEPKVEESRGSSAFVNTPELVPRKPTFPENSRTMMDALVSLIYKSGDER
TKARAMLCDIYHHALLDEFATSRDLLLMSHLQDNIQHMDISSQILFNRAMAQLGLCAFRVGLITEAHGCLSELYSGGRVKELLAQGFSQSRYYEKTPEQE
RLERRRQMPYHMHINLELLESVHLSCAMLLEVPSMAANVLDDKRKVISKTFRRLLDVSERQTFTGPPENVRDHVMAATRALRKGDFQKAFDVIESLDVWK
LLRNRDGVLGMLKAKIKEEALRTYLFSYTSSYDSLGLDQLTKMFDLSAAETKVIVSKMMINDELQASWDQPTQCIVFHDLEQTRLQALAFQLTEKLSILA
ESNERAIEAKIGGGGLDLPQRRRDGQDFANLAASGVKWHENSSFTHGRQGSGRSGYGGGGGGGRPQVLGQAFGTSYSKGASNLRAGGGYSGGSRYQDAPT
RMVTLNKGARA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G56150 ATTIF3C1, ATEIF... eukaryotic translation initiat... Potri.005G245100
[exp]
0 1 TIF3.9
AT5G27640 ATTIF3B1, ATEIF... EUKARYOTIC TRANSLATION INITIAT... Potri.018G015200
[exp]
1.00 0.8925 EIF3.5
AT1G80620 S15/NS1, RNA-binding protein (... Potri.003G178800
[exp]
2.00 0.8358
AT1G18070 Translation elongation factor ... Potri.019G062500
[exp]
7.61 0.8387
AT3G56150 ATTIF3C1, ATEIF... eukaryotic translation initiat... Potri.002G016900
[exp]
7.74 0.7945 Pt-TIF3.10
AT3G12860 NOP56-like pre RNA processing ... Potri.015G092900
[exp]
8.12 0.8367 NOP56.1
AT3G23990 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat... Potri.002G252900
[exp]
16.30 0.8104 Pt-CPN60.2
AT1G75335 unknown protein Potri.019G095600
[exp]
18.02 0.7941
AT5G57120 unknown protein Potri.018G140200
[exp]
20.49 0.7934
AT3G05060 NOP56-like pre RNA processing ... Potri.013G032300
[exp]
20.97 0.7995
AT3G62120 Class II aaRS and biotin synth... Potri.014G112400
[exp]
21.79 0.7795

Potri.005G245100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.