Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20300 571 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77360 172 / 9e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 160 / 2e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49730 158 / 3e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18900 158 / 1e-41 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT1G74900 151 / 1e-40 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 147 / 3e-38 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G74750 147 / 7e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G52640 144 / 1e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15010 142 / 8e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G245400 [exp] 733 / 0 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G181900 [exp] 196 / 3e-57 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G102700 [exp] 169 / 1e-46 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G176100 [exp] 154 / 9e-41 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G114700 [exp] 153 / 1e-40 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 150 / 1e-39 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G070200 [exp] 145 / 2e-38 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G066700 [exp] 143 / 4e-37 AT1G20300 213 / 5e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050400 [exp] 142 / 1e-36 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011459 [exp] 525 / 0 AT1G20300 711 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037533 [exp] 384 / 1e-130 AT1G20300 472 / 2e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 190 / 2e-53 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001633 [exp] 172 / 1e-47 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011566 [exp] 162 / 2e-43 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030603 [exp] 159 / 7e-43 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008102 [exp] 155 / 4e-41 AT5G11310 620 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 148 / 6e-39 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042307 [exp] 144 / 2e-37 AT1G74900 549 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021991 [exp] 140 / 5e-36 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.005G245500.1 pacid=42805677 polypeptide=Potri.005G245502.1.p locus=Potri.005G245500 ID=Potri.005G245500.1.v4.1 annot-version=v4.1 GACGAAGAAGAACACGCAATAAAGACCCTGAAAACCGCATTGTCACCTGAAGATACCTTAATAGCCGAGAAATTCCACTCTCTGATGAAAGAGCATTACC TCAGCAACCCCAGAAAAACACCACCACCCGACCCCACCTACACCATCTCATCTCTGTCCCTTGATTTCTCTCAGATCATTTCGACCGTCCGTTCCATCTC CCCATCCATCGTTCGTCACGTCATTGCACAGTCCAGTGCGGTTCGTCACGGTATCCCAGTGCCTCAAGTCCTTGCTTTCTTCAACTGGGCTAGCAATCAA GACGGTTTTCGTAAATCCCCTGAGGCTTACAATGAAATGGTTGATTTTTCTGGTCAGGTAATGATGTTTGATGTAGCTTGGTATGTTATTGATTTAATGA AAGCTAGAAATGTTGATGTTACCGTAGAGACGTTCTTGATTCTTATGAGAAGGTATGTTAGAGCTGGATTGGCAGCCGAGGCGATCCATGCTTTCAATCG TATGGAGGATTATAATTGTAAGCCTGATAAGATTGCATTTTCGATTTTGATTAGTATTTTGTGTAGGGAACGAAGAGCTAGCCAAGCTCAGGAATTTTTT GATAGTTTAAAAGATAAGTTTGAGCTTGATGCGGAGAGGGTGTTTGGAGACATGAAAATGTCTGGGATTAAGCCTAATGTTGATACGTACAGTATTGTTA TCGATTCTTTGTGTAGGTGCGGGCAAACTAAACGTGCTCATGATGTTTTCGCGGAGATGCTTGATGCAGGATGTCATCCAAATTCGATAATTTTTAACAG TTTGATGAGGATACATGCTGAAGCTGGGAGGACGGAAAAGGTTCTGCAATTGTATAATCAAATGAAGAGGTTTGGATGTGAGCCTGATATGGTCACTTAT AATTTTCTCCTAGAGACTCATTGCAAGGACGAGAATCGTGAGGATGTGAAAAGGATGCTTATACTGATGATTGAGAAAGGTTGTGCTCCGAATGCGTCTA CCTTCAATACGTTAATTGTGTGTGTCGCAAAGTTTGGTAATGTAAATGCTGTTCACAGGATTTATGACATAATGAAGGAGTTCAAGTATGAGCCTAATGC GAAAATGCATGTTGCCTTGAAATCAACTGATATGGTTTTGAAGTTGAAGAAGAAGATGGATGAGAATAAGATTGAACCTAATGTGAATACGTACAAGGTT TTGATCACAATGTATTGTGACATGGAGAATTGGAAGGATGCTTATGAGTTGTGTAGAGAGATGATCGAAGAGAAGCGCTTGAAACCTAGCCTGCAGGTTT ATGAAATGGTTCTTCAGCAGCTGAAGAAAGCAGGACAGTTAAAGAAGCACAAAGAATTGGTAAAAATGATGGTAGATAGAGGATTTGTTTCTCGCCCCCC TTGA
AA sequence Show only first row Show all	>Potri.005G245500.1 pacid=42805677 polypeptide=Potri.005G245502.1.p locus=Potri.005G245500 ID=Potri.005G245500.1.v4.1 annot-version=v4.1 DEEEHAIKTLKTALSPEDTLIAEKFHSLMKEHYLSNPRKTPPPDPTYTISSLSLDFSQIISTVRSISPSIVRHVIAQSSAVRHGIPVPQVLAFFNWASNQ DGFRKSPEAYNEMVDFSGQVMMFDVAWYVIDLMKARNVDVTVETFLILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRERRASQAQEFF DSLKDKFELDAERVFGDMKMSGIKPNVDTYSIVIDSLCRCGQTKRAHDVFAEMLDAGCHPNSIIFNSLMRIHAEAGRTEKVLQLYNQMKRFGCEPDMVTY NFLLETHCKDENREDVKRMLILMIEKGCAPNASTFNTLIVCVAKFGNVNAVHRIYDIMKEFKYEPNAKMHVALKSTDMVLKLKKKMDENKIEPNVNTYKV LITMYCDMENWKDAYELCREMIEEKRLKPSLQVYEMVLQQLKKAGQLKKHKELVKMMVDRGFVSRPP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20300			Pentatricopeptide repeat (PPR)...		Potri.005G245500 [exp]	0	1
AT4G08690			Sec14p-like phosphatidylinosit...		Potri.005G168100 [exp]	7.14	0.5147
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.006G057700 [exp]	11.31	0.4683
AT3G60650			unknown protein		Potri.002G144400 [exp]	28.61	0.4494
					Potri.013G104501 [exp]	66.13	0.3741
AT5G47530			Auxin-responsive family protei...		Potri.019G096400 [exp]	72.80	0.4176
AT1G28510			Optic atrophy 3 protein (OPA3)...		Potri.019G092900 [exp]	92.99	0.3955
AT3G20190			Leucine-rich repeat protein ki...		Potri.004G170274 [exp]	151.22	0.3614

Compare expression of checked genes

Potri.005G245500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.