Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76080 418 / 3e-148 ATCDSP32, CDSP32 ARABIDOPSIS THALIANA CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD, chloroplastic drought-induced stress protein of 32 kD (.1) AT1G19730 61 / 1e-11 ATTRX4, ATH4 thioredoxin H-type 4, Thioredoxin superfamily protein (.1) AT1G45145 60 / 3e-11 LIV1, ATTRX5, ATH5 LOCUS OF INSENSITIVITY TO VICTORIN 1, thioredoxin H-type 5 (.1) AT1G59730 57 / 3e-10 ATH7 thioredoxin H-type 7 (.1) AT5G42980 57 / 3e-10 ATTRXH3, ATTRX3, ATH3 THIOREDOXIN H3, thioredoxin H-type 3, thioredoxin 3 (.1) AT3G51030 57 / 3e-10 ATTRX1, ATTRXH1 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) AT3G08710 55 / 4e-09 TRXH9, ATH9 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) AT3G17880 57 / 5e-09 ATHIP2, ATTDX HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) AT5G39950 53 / 1e-08 ATTRXH2, ATTRX2, ATH2 Arabidopsis thioredoxin h2, thioredoxin 2 (.1) AT4G29670 48 / 2e-06 ACHT2 atypical CYS HIS rich thioredoxin 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G016401 [exp] 147 / 1e-44 AT1G76080 138 / 9e-42 ARABIDOPSIS THALIANA CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD, chloroplastic drought-induced stress protein of 32 kD (.1) Potri.007G018000 [exp] 62 / 5e-12 AT3G51030 186 / 2e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.005G232700 [exp] 52 / 2e-08 AT3G51030 162 / 5e-53 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.017G076700 [exp] 52 / 2e-08 AT5G39950 168 / 7e-55 Arabidopsis thioredoxin h2, thioredoxin 2 (.1) Potri.016G138800 [exp] 52 / 3e-08 AT3G08710 208 / 1e-70 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Potri.002G030000 [exp] 50 / 1e-07 AT3G51030 160 / 3e-52 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.008G194100 [exp] 50 / 2e-07 AT1G59730 119 / 3e-35 thioredoxin H-type 7 (.1) Potri.006G110100 [exp] 48 / 1e-06 AT3G08710 178 / 1e-58 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Potri.015G036000 [exp] 48 / 3e-06 AT3G17880 396 / 3e-137 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017245 [exp] 427 / 1e-151 AT1G76080 416 / 2e-147 ARABIDOPSIS THALIANA CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD, chloroplastic drought-induced stress protein of 32 kD (.1) Lus10005624 [exp] 424 / 1e-147 AT1G76080 419 / 2e-145 ARABIDOPSIS THALIANA CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD, chloroplastic drought-induced stress protein of 32 kD (.1) Lus10041799 [exp] 67 / 1e-13 AT3G51030 182 / 8e-61 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10028349 [exp] 66 / 3e-13 AT3G51030 179 / 1e-59 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10014277 [exp] 62 / 6e-12 AT3G51030 185 / 4e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10025979 [exp] 60 / 3e-11 AT3G51030 167 / 3e-55 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10005258 [exp] 59 / 1e-10 AT5G39950 189 / 4e-63 Arabidopsis thioredoxin h2, thioredoxin 2 (.1) Lus10024293 [exp] 57 / 3e-10 AT3G51030 162 / 4e-53 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10030666 [exp] 57 / 5e-10 AT5G39950 189 / 3e-63 Arabidopsis thioredoxin h2, thioredoxin 2 (.1) Lus10000802 [exp] 52 / 2e-08 AT3G51030 165 / 5e-54 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Potri.005G245700.1 pacid=42804560 polypeptide=Potri.005G245700.1.p locus=Potri.005G245700 ID=Potri.005G245700.1.v4.1 annot-version=v4.1 ATGGCTGCTATCACAAATTTTTTGTCAAAACCACCATTGTCTCTTTCAAACACCCCTAAATTAAGCCCTCCTTGTTTGCACAGTTCCTTCTTAGTACCCT TTGTTACTAAAGAAGTTAAACCCCTTGCAGCAAAACTTGGTACAGGAAGAACACACTTTATGACGAAGGCTACAGCTGCCCCAGGGACCAAAAAACCTGT CAACGATGAAAAAGTACAAAAAATTCACAGCGTAGAGGAGTTCGATGAAGCACTTAAAACTGCAAAAAACAAGCTTGTTGTTGTAGAATATGCAGCAAGC CACAGTTACCATAGCAGTCAAATCTACCCTTTTATGGTAGAGCTTAGCAGAACCTGCAACGATGTAGATTTCCTTCTTGTGATGGCAGATGAATCAGGGA AGACTAGAGAGCTTTGCAAGAGAGAAAAAATTGAAAAAGTTCCACACTTTAGCTTCTACAAGAGCTTGGAGAAGATTCATGAAGAAAAAGGGATTACCCA AGATAAGCTGATGGGAGATGTTTTATACTACGGTGATAATCACTCTGCTGTTGTGCAGCTGCATCTCAGAGAAGACGTGGAGAAGTTGATTGATGATCAT AAAGCTGATCACAAGCTGATTGTTCTTGATGTGGGGTTGAAGCATTGTGGGCCATGCGTGAAGGTTTACCCAACGGTGATTAAGTTGTCAAGGCAGATGT CTGATACTGTGGTTTTTGCACGCATGAACGGTGACGAGAATGATAGCTGCATGCAGTTTTTGAAGGACATGGACGTTGTTGAGGTGCCTACTTTCTTGTT CATCAGAGATGGTAAGATTTGTGGAAGGTATGTAGGATCTGGCAAAGGAGAACTTATTGGAGAGATTCTTAGATACCAAGGAGTTCGTGTTACCTACTAG
AA sequence Show only first row Show all	>Potri.005G245700.1 pacid=42804560 polypeptide=Potri.005G245700.1.p locus=Potri.005G245700 ID=Potri.005G245700.1.v4.1 annot-version=v4.1 MAAITNFLSKPPLSLSNTPKLSPPCLHSSFLVPFVTKEVKPLAAKLGTGRTHFMTKATAAPGTKKPVNDEKVQKIHSVEEFDEALKTAKNKLVVVEYAAS HSYHSSQIYPFMVELSRTCNDVDFLLVMADESGKTRELCKREKIEKVPHFSFYKSLEKIHEEKGITQDKLMGDVLYYGDNHSAVVQLHLREDVEKLIDDH KADHKLIVLDVGLKHCGPCVKVYPTVIKLSRQMSDTVVFARMNGDENDSCMQFLKDMDVVEVPTFLFIRDGKICGRYVGSGKGELIGEILRYQGVRVTY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76080		ATCDSP32, CDSP3...	ARABIDOPSIS THALIANA CHLOROPLA...		Potri.005G245700 [exp]	0	1
AT5G42070			unknown protein		Potri.003G141700 [exp]	1.00	0.9829
AT4G14870		SECE1	secE/sec61-gamma protein trans...		Potri.008G153400 [exp]	1.41	0.9798
AT3G20230			Ribosomal L18p/L5e family prot...		Potri.019G081000 [exp]	4.79	0.9592
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.017G030400 [exp]	4.89	0.9689
					Potri.004G019733 [exp]	4.89	0.9629
AT2G47485			unknown protein		Potri.002G200000 [exp]	5.00	0.9741
AT2G01870			unknown protein		Potri.001G257400 [exp]	5.47	0.9787
AT4G01037		AtWTF1	what's this factor?, Ubiquitin...		Potri.014G096800 [exp]	5.65	0.9644
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G096425 [exp]	6.32	0.9631
AT2G20690			lumazine-binding family protei...		Potri.019G100500 [exp]	9.79	0.9591

Compare expression of checked genes

Potri.005G245700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.