Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SMT1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20330 669 / 0 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) AT1G76090 647 / 0 SMT3 sterol methyltransferase 3 (.1) AT5G13710 266 / 5e-87 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2) AT1G64970 71 / 2e-13 VTE4, TMT1, G-TMT VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) AT1G73600 69 / 9e-13 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G48600 65 / 2e-11 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G18000 64 / 5e-11 XPL1, NMT1, XIPOTL1, PEAMT XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G41040 52 / 4e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G23360 49 / 1e-06 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G33120 46 / 3e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G016300 [exp] 731 / 0 AT1G20330 647 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.001G263700 [exp] 273 / 2e-89 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.009G058600 [exp] 264 / 6e-86 AT5G13710 591 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.016G056000 [exp] 231 / 3e-73 AT5G13710 513 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.013G077000 [exp] 77 / 1e-15 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Potri.015G039000 [exp] 68 / 3e-12 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.012G047400 [exp] 66 / 1e-11 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G188600 [exp] 52 / 2e-07 AT1G23360 354 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.018G120000 [exp] 52 / 3e-07 AT2G41040 418 / 6e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005625 [exp] 595 / 0 AT1G20330 582 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10023995 [exp] 454 / 9e-162 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10004158 [exp] 145 / 4e-43 AT1G20330 142 / 9e-43 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10029498 [exp] 121 / 5e-32 AT5G13710 380 / 2e-133 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Lus10009537 [exp] 76 / 4e-15 AT1G64970 453 / 3e-160 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10020357 [exp] 76 / 4e-15 AT1G64970 434 / 7e-154 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10031348 [exp] 67 / 5e-12 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10039600 [exp] 63 / 1e-11 AT5G13710 174 / 2e-54 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Lus10009056 [exp] 66 / 2e-11 AT1G73600 773 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10042006 [exp] 64 / 7e-11 AT3G18000 841 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain CL0063 [poplar] [flax] PF08498 [poplar] [flax] Sterol_MT_C Sterol methyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.005G245800.1 pacid=42802611 polypeptide=Potri.005G245800.1.p locus=Potri.005G245800 ID=Potri.005G245800.1.v4.1 annot-version=v4.1 ATGGACTCTCTCGCACTCTTCTGCACAGGAGCTCTCATAGCCGGTGGCATCTACTGGTTCGTTTGCATTCTCGGTCCAGCCGAGCAGAAGGGAAAACGGG CTGTAGATCTCTCCGGTGGCTCCATCTCAGCCGAGAAAGTCCAAGATAACTACAAACAATACTGGTCTTTTTTCCGCAGCCCCAAAGAGATCGAAACAGC CGAAAAAGTCCCTGATTTCGTCGACACTTTCTACAATCTAGTCACCGATATTTACGAGTGGGGATGGGGCCAGTCTTTCCATTTCTCTCCTTCCATCCCT GGAAAGTCCCACCTTGAAGCCACGCGCCTTCACGAAGAGATGGCCGTGGATCTGATTAATGTCAAGCCTGGAGATCGAATCCTGGATGTTGGATGCGGCG TCGGTGGTCCTATGCGTGCTATCGCTGCTCATTCACGCGCTAAGGTGGTCGGTATCACAATCAACGATTATCAAGTGAGTCGTGCGCGTACGCACAACAA GAAAGCTGGGTTAGATTCACTTTGTGAAGTTGTTCAAGGGAATTTCCTTGAGATGCCGTTTCCGGAGAACAGCTTCGACGGAGCTTACTCGATCGAAGCG ACATGTCACGCGCCGAAACTAGAAGAGGTTTATGCAGAGATCTTTAGGGTCTTGAAGCCCGGATCTCTTTATGTGTCCTACGAATGGGTCACAACTGATA AGTACAAGTCTTCCGATCCTGAACACGTGGAGGTTATTCAAGGTATTGAAAGAGGTGATGCTCTACCTGGGCTAAGAAACTATTCTGATATTGCAGAGAC AGCCAGGAAGGTAGGATTTGAAGTAGTGAAAGAGAAAGACTTGGCTAAACCACCAGCACAACCATGGTGGACCAGGCTTCAGATGGGAAGGATTGCTTAC TGGAGGAACCACATTGTTGTAACAATACTTTCTGCTTTGGGGATTGCTCCAAAAGGGACTGTCGATGTTCACGAGATGCTGTTCAAGACAGCTGATTATC TTACTAAGGGTGGTGATACTGGGATTTTCACTCCAATGCACATGATTCTCTGCAGAAAACCTGAGAAGAAGACAGAAGAAACCTCAAATTCTTAG
AA sequence Show only first row Show all	>Potri.005G245800.1 pacid=42802611 polypeptide=Potri.005G245800.1.p locus=Potri.005G245800 ID=Potri.005G245800.1.v4.1 annot-version=v4.1 MDSLALFCTGALIAGGIYWFVCILGPAEQKGKRAVDLSGGSISAEKVQDNYKQYWSFFRSPKEIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIP GKSHLEATRLHEEMAVDLINVKPGDRILDVGCGVGGPMRAIAAHSRAKVVGITINDYQVSRARTHNKKAGLDSLCEVVQGNFLEMPFPENSFDGAYSIEA TCHAPKLEEVYAEIFRVLKPGSLYVSYEWVTTDKYKSSDPEHVEVIQGIERGDALPGLRNYSDIAETARKVGFEVVKEKDLAKPPAQPWWTRLQMGRIAY WRNHIVVTILSALGIAPKGTVDVHEMLFKTADYLTKGGDTGIFTPMHMILCRKPEKKTEETSNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Potri.005G245800 [exp]	0	1	SMT1.2
AT5G62890			Xanthine/uracil permease famil...		Potri.012G077400 [exp]	2.23	0.8748
AT1G13250		GATL3	galacturonosyltransferase-like...		Potri.010G129400 [exp]	2.23	0.8858
AT2G26110			Protein of unknown function (D...		Potri.018G053000 [exp]	2.82	0.8775
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.009G093900 [exp]	3.46	0.8846
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Potri.008G190000 [exp]	4.89	0.8731
AT5G03260		LAC11	laccase 11 (.1)		Potri.009G102700 [exp]	7.28	0.8160
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.006G014900 [exp]	8.36	0.8266
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.003G161700 [exp]	9.00	0.8808	CYP51G5,CYP51.1
AT1G53320	TUB	AtTLP7	tubby like protein 7 (.1)		Potri.011G109300 [exp]	10.00	0.8646
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.003G183300 [exp]	11.48	0.8591

Compare expression of checked genes

Potri.005G245800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.