Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16980 412 / 3e-141 Major facilitator superfamily protein (.1.2) AT2G16990 402 / 3e-137 Major facilitator superfamily protein (.1.2) AT2G16970 378 / 5e-128 MEE15 maternal effect embryo arrest 15, Major facilitator superfamily protein (.1) AT5G42210 311 / 2e-104 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G016200 [exp] 795 / 0 AT2G16980 384 / 5e-130 Major facilitator superfamily protein (.1.2) Potri.004G178600 [exp] 584 / 0 AT2G16980 417 / 2e-143 Major facilitator superfamily protein (.1.2) Potri.009G138900 [exp] 542 / 0 AT2G16990 405 / 1e-138 Major facilitator superfamily protein (.1.2) Potri.008G022100 [exp] 295 / 2e-95 AT2G16980 211 / 3e-63 Major facilitator superfamily protein (.1.2) Potri.010G237300 [exp] 279 / 2e-89 AT2G16980 203 / 3e-60 Major facilitator superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005626 [exp] 677 / 0 AT2G16980 396 / 4e-135 Major facilitator superfamily protein (.1.2) Lus10004157 [exp] 663 / 0 AT2G16980 394 / 2e-133 Major facilitator superfamily protein (.1.2) Lus10023994 [exp] 509 / 9e-180 AT2G16980 412 / 2e-141 Major facilitator superfamily protein (.1.2) Lus10025087 [exp] 495 / 5e-174 AT2G16980 405 / 3e-138 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.005G245900.1 pacid=42802724 polypeptide=Potri.005G245900.1.p locus=Potri.005G245900 ID=Potri.005G245900.1.v4.1 annot-version=v4.1 ATGAAAACGTTGTCAGGTTTAAGTCATCTCTTCATTACAATATTTCTGCATAATTTCTCAGCAGTTATGGTAATCCCTGCCATCACTGATGTTACAATGT CTGCCTTATGCCCCGGAAGAGATGAGTGTTCACTGGCCATTTACCTAACAGGATTCCAACAAGCGATCATAGGGCTTGGAACGTTGGTGATGATGCCTTT AATAGGGAATATGTCGGACAAGTATGGCCGGAAAGCTTTGCTTACCGTTCCATTGAGTCTTGTAATAGTTCCCTCAGCCATATTGGCCTACAGCAGAACG AGGAACTTCTTTTACGCGTACTATGTCGTCAAGACTCTCATTGCCATGGTCTGCGAGGGAAGCGTCCCATGCCTTGCCCTCGCCTATGTGGCAGACAATG TTCCTGAGGGCCGGCGAGCATCCGCGTTTGGGATTCTTTCAGGCATTGCGTCCTCCGCTTTCGTATGCGGAAACCTTTCCACTCGTTTCCTCTCCACCGC CTCCACCTTCCAGGTTTCTGCCTCGGTAGCAATCGCATCTCTAGTGTACATGAGATTTTTTCTCCAGGATTCCATCATTGATGAACAACTAACGGCTCCA ATATTAACTTCTAATGGGAAACCGAAAGGAAAAGGAAAAGATTATGCTACAAATGAGATTCCAAGTAAAAATGTGCAGATTTTTAAATCAGCGCCTTCCT TGGAGGATATGCTCTGCTTGCTTAAAAGCAGCGTGACGCTTTCGCAAGCTGCCGTTGTCGCATTTTTCTACAGTCTCGCGGAAGTTGGTCTTCATGCTTC GTTACTGTATTATTTGAAGGCACGATTTCACTTTAACAAGGACCAATTTGCTGACTTGATGGTAATTACTGGAATTGCAGGGACTCTTTCACAGTTGGTT CTTATGCCTATACTGGCTCCTGCTCTAGGAGAAGCAAGGCTGCTTGCAGTAGGGCTTTTTTTTACATGTGTACATGTGTTTCTTTACAGCATTGCGTGGA CCTTCTGGGTACCTTACGTTGCTGCCATGTTCTCCGTTCTGATTGTCTTTTCACAACCATGTATGCGGAGCATTGTGTCTAAGCAAGTTGGATCCTGTGA GCAGGGGAAGGCTCAAGGGTGCATTTCTGGTATAAGCTCCTTTGCTAATGTCATTTCTCCCTTGCTTTTCTCTCCTTTAACAGCTTTATTTCTCTCTGAA AGGGCACCATTCCACTTCCCTGGTTTCAGTATTATGTGCGTCGGATTTGCATCGATGATAGCCTTCATCCAGAGTCTCATGATAAGGATCGCTCCTCCCA TTGCAAATGAGAAGGTCTGTAATTCCAACTACGTGGATGCCTAG
AA sequence Show only first row Show all	>Potri.005G245900.1 pacid=42802724 polypeptide=Potri.005G245900.1.p locus=Potri.005G245900 ID=Potri.005G245900.1.v4.1 annot-version=v4.1 MKTLSGLSHLFITIFLHNFSAVMVIPAITDVTMSALCPGRDECSLAIYLTGFQQAIIGLGTLVMMPLIGNMSDKYGRKALLTVPLSLVIVPSAILAYSRT RNFFYAYYVVKTLIAMVCEGSVPCLALAYVADNVPEGRRASAFGILSGIASSAFVCGNLSTRFLSTASTFQVSASVAIASLVYMRFFLQDSIIDEQLTAP ILTSNGKPKGKGKDYATNEIPSKNVQIFKSAPSLEDMLCLLKSSVTLSQAAVVAFFYSLAEVGLHASLLYYLKARFHFNKDQFADLMVITGIAGTLSQLV LMPILAPALGEARLLAVGLFFTCVHVFLYSIAWTFWVPYVAAMFSVLIVFSQPCMRSIVSKQVGSCEQGKAQGCISGISSFANVISPLLFSPLTALFLSE RAPFHFPGFSIMCVGFASMIAFIQSLMIRIAPPIANEKVCNSNYVDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16980			Major facilitator superfamily ...		Potri.005G245900 [exp]	0	1
AT3G49190			O-acyltransferase (WSD1-like) ...		Potri.017G010300 [exp]	3.16	0.8682
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.001G251200 [exp]	4.69	0.8552
AT5G27730			Protein of unknown function (D...		Potri.005G025200 [exp]	5.47	0.8523
AT1G15380		GLYI4	glyoxylase I 4, Lactoylglutath...		Potri.007G015100 [exp]	6.63	0.8221
AT5G41920	GRAS		GRAS family transcription fact...		Potri.006G021400 [exp]	6.92	0.7640
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.007G026800 [exp]	7.48	0.7891
AT5G15410		ATCNGC2, DND1	DEFENSE NO DEATH 1, CYCLIC NUC...		Potri.017G089900 [exp]	7.74	0.8164
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.013G002200 [exp]	10.95	0.8034	SOYAP2.2
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.009G045800 [exp]	12.00	0.7886
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Potri.009G157600 [exp]	12.12	0.8003

Compare expression of checked genes

Potri.005G245900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.