Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35790 1170 / 0 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT2G42010 936 / 0 PLDBETA1 phospholipase D beta 1 (.1) AT4G00240 916 / 0 PLDBETA2 phospholipase D beta 2 (.1) AT4G11850 910 / 0 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G11840 907 / 0 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G11830 891 / 0 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT3G15730 704 / 0 PLDALPHA1 phospholipase D alpha 1 (.1) AT1G52570 697 / 0 PLDALPHA2 phospholipase D alpha 2 (.1) AT5G25370 682 / 0 PLDALPHA3 phospholipase D alpha 3 (.1) AT1G55180 489 / 2e-161 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G016100 [exp] 1612 / 0 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G105600 [exp] 1203 / 0 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.007G060300 [exp] 1190 / 0 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.003G015000 [exp] 1165 / 0 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.014G074700 [exp] 929 / 0 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1) Potri.002G152100 [exp] 926 / 0 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1) Potri.001G112100 [exp] 917 / 0 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.001G193000 [exp] 703 / 0 AT1G52570 1412 / 0.0 phospholipase D alpha 2 (.1) Potri.003G032800 [exp] 697 / 0 AT3G15730 1419 / 0.0 phospholipase D alpha 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004156 [exp] 1169 / 0 AT4G35790 1079 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10041855 [exp] 1163 / 0 AT4G35790 1280 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10012699 [exp] 1156 / 0 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10001293 [exp] 1154 / 0 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10005627 [exp] 1070 / 0 AT4G35790 969 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10028401 [exp] 999 / 0 AT4G35790 1050 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10006819 [exp] 930 / 0 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10005782 [exp] 928 / 0 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1) Lus10006718 [exp] 882 / 0 AT2G42010 1264 / 0.0 phospholipase D beta 1 (.1) Lus10014146 [exp] 874 / 0 AT2G42010 1254 / 0.0 phospholipase D beta 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0479 [poplar] [flax] PLD PF00614 [poplar] [flax] PLDc Phospholipase D Active site motif CL0479 [poplar] [flax] PF12357 [poplar] [flax] PLD_C Phospholipase D C terminal
Representative CDS sequence Show only first row Show all	>Potri.005G246000.2 pacid=42803463 polypeptide=Potri.005G246000.2.p locus=Potri.005G246000 ID=Potri.005G246000.2.v4.1 annot-version=v4.1 ATGGAAGCAGCAGACGATAATCCGAAGACAGCAACATCGATTCTCCATGGAGACCTTGATTTAAGAATAATCGAAGCTCGAAGGTTACCAAACATGGATT TAGTATCAGACCGTCTTCGTCGATGTTTTACTGTATTTGACTCGTGTCGGGATCCATGCTCCAAAGAGAGAAAAGAACAGCAACACCGCCGCCACAAGAT CATTACAAGTGACCCATACGTTATGGTTGGGGTATCGGGCGCAAGAGTCGCCCGCACGCGCGTGATTTCGAACAATCAAAATCCGATATGGAACGAACAC TTCAAGATTCCTTTGGCTCACCCGGCTGAAAAGATTGAATTTTACGTGAAAGATGATGACATGTTCGGTGCTGAGTTTATAGGGATAGCAAGTGTTGAAG TAGAGAAGATCTTGTCAGGTGAAACGATCAAGGATTGGTTTCCCATAATCGGATTGTACGGAAAACCGCCAAAAACTGGATGTGCCCTTCACGTCGAGAT GAAATTTACGAAATGTGAGCAGATTGATAATAAACTCGGGGTTGAAAATTGTTATTTTCCGGTGAGGCATGGAGGGAATGTTACCCTTTATCAGGACGCG CATGTGCCGGATTCGAGCTTGCCGGAGATTGAATTAGAGAATGGGAATTTGTTCAGGCATGAGAAATGCTGGGAGGATATATGTCATGCTATAGTAGAAG CACATCATTTGGTTTATATAGTTGGTTGGTCGATTTATCATAAGGTAAGATTGGTGAGGGAGCCTTCAAAACCATTGCCGAGAGGTGGGGATTTGAATTT GGGAGAATTGCTCAAGTATAAATCACAAGAAGGTGTGAGAGTTCTGTTGCTGGTTTGGGATGATAAGACTTCTCATAACAAGTTTTTTATTCGCACGACT GGAGTGATGCAAACTCATGATGAAGAGACGCGGAAGTTTTTCAAGCATTCTTCAGTGAATTGTGTACTGTCGCCGCGTTATCCAGGCAGTAAGCTCAGCT TTTTCAAGCAGCAGGTTGTTGGGACCCTCTATACACATCATCAGAAATGTGTAATTGTGGATGCACAGGCATCTGGAAACAACCGGAAGATAACTGCTTT TATAGGGGGTCTAGATCTTTGTGATGGCCGCTATGATACACCTGAACATCGGTTATTTCAGGATCTCGACACTGTATTTCAGGATGATTATCATAATCCA ACATTTCCCGCAGGAACAATGGGCCCAAGGCAGCCATGGCATGATTTGCATTGCAAAATCGAAGGGCCTGCTGCATATGATGTGCTTACTAATTTTGAGC AGCGATGGAGGAAAGCCTCAAAATGGTCAGAGTTTGGACGAAGTTTTAAAAGGTCAACGCCTTGGCGCGACGATTCATTAATAAAGTTAGAACGGATCTC ATGGATACATGGTCCTTCCCCATCAGTCCCCAGTGATGATCCTAAATTATGGGTGTCCAATGAAGATGATCCTGAAAACTGGCATGTTCAGGTTTTCCGA TCTATAGATTCGGGATCTTTGAAAGGATTTCCCAAAGATGTTTATCGAGCTGAAAAGCAGAACCTTGTTTGTGCTAAAAATATGGTCATTGACAAGAGCA TTCAGACAGCATATGTTCAGGCAATCAGATTGGCCCAGCACTTCATATATATTGAGAATCAATATTTCCTTGGGTCATCGTTTGCGTGGTCAGAATATAA AAATGCAGGTGCTGAAAATTTAATTCCTATGGAGTTGGCATTGAAGATAGCAAGTAAAATAAGAGCAAAGGAGAGATTCGCTGTTTATGTTGTGATACCA ATGTGGCCTGAGGGTGCTCCCACTTCTGCCTCTGTACAAGAAATTCTCTTTTGGCAGGGACAGACGATGCAAATGATGTATGAAGTGATAGCAAAAGAGT TGAAATCCATGAATCTTGAGAATTCACATCCACAAGACTACCTAAATTTCTACTGTCTTGGTAATAGGGAACAAGTGCCAGGTTCAGACAAGTCTTGCGA CCAGACGGTTTCCATGTCTCAAAAATTTCAACGGTTTATGGTTTACGTACATGCAAAGGGAATGATAGTAGATGACGAGTACATAATACTGGGATCTGCC AATATTAACGAACGATCTATGGCCGGTTCAAGAGATACTGAGATAGCAATGGGCGCATATCAGCCTCATCATACGTGGAGCAATAAGAAGAGACATCCAC TAGGCCAGGTATATGGGTACCGAATGTCTCTCTGGGCAGAACATTTGGGGCTGGTTGATAACTTGTTTAAAGAGCCTGGAAGTTTGGATTGTGTCAAGAG CGTGAACAAAATCGCTGAAGATAACTGGAAGAAGTTCACGGCGGAGGATTTTACACTATTGCAAGGACATCTTCTTAAATACCCTGTGGAGGTTGATGGC AATGGCAAGGTAAGCCCTTTGCCAGGGCAAGAGACTTTCCCGGATGTTGGTGGCAAGGTGCTTGGAGCCCGTACAAACCTTCCCGATGCATTAACTACAT AG
AA sequence Show only first row Show all	>Potri.005G246000.2 pacid=42803463 polypeptide=Potri.005G246000.2.p locus=Potri.005G246000 ID=Potri.005G246000.2.v4.1 annot-version=v4.1 MEAADDNPKTATSILHGDLDLRIIEARRLPNMDLVSDRLRRCFTVFDSCRDPCSKERKEQQHRRHKIITSDPYVMVGVSGARVARTRVISNNQNPIWNEH FKIPLAHPAEKIEFYVKDDDMFGAEFIGIASVEVEKILSGETIKDWFPIIGLYGKPPKTGCALHVEMKFTKCEQIDNKLGVENCYFPVRHGGNVTLYQDA HVPDSSLPEIELENGNLFRHEKCWEDICHAIVEAHHLVYIVGWSIYHKVRLVREPSKPLPRGGDLNLGELLKYKSQEGVRVLLLVWDDKTSHNKFFIRTT GVMQTHDEETRKFFKHSSVNCVLSPRYPGSKLSFFKQQVVGTLYTHHQKCVIVDAQASGNNRKITAFIGGLDLCDGRYDTPEHRLFQDLDTVFQDDYHNP TFPAGTMGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKASKWSEFGRSFKRSTPWRDDSLIKLERISWIHGPSPSVPSDDPKLWVSNEDDPENWHVQVFR SIDSGSLKGFPKDVYRAEKQNLVCAKNMVIDKSIQTAYVQAIRLAQHFIYIENQYFLGSSFAWSEYKNAGAENLIPMELALKIASKIRAKERFAVYVVIP MWPEGAPTSASVQEILFWQGQTMQMMYEVIAKELKSMNLENSHPQDYLNFYCLGNREQVPGSDKSCDQTVSMSQKFQRFMVYVHAKGMIVDDEYIILGSA NINERSMAGSRDTEIAMGAYQPHHTWSNKKRHPLGQVYGYRMSLWAEHLGLVDNLFKEPGSLDCVKSVNKIAEDNWKKFTAEDFTLLQGHLLKYPVEVDG NGKVSPLPGQETFPDVGGKVLGARTNLPDALTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.005G246000 [exp]	0	1
AT2G01620		MEE11	maternal effect embryo arrest ...		Potri.008G133100 [exp]	2.00	0.8132
AT1G61740			Sulfite exporter TauE/SafE fam...		Potri.011G030900 [exp]	2.23	0.8222
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Potri.016G137300 [exp]	7.34	0.8078
AT1G56220			Dormancy/auxin associated fami...		Potri.005G024250 [exp]	7.48	0.7464
AT4G26080		AtABI1, ABI1	ABA INSENSITIVE 1, Protein pho...		Potri.006G164632 [exp]	8.48	0.7855
AT2G39130			Transmembrane amino acid trans...		Potri.010G226000 [exp]	9.94	0.7752
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Potri.009G007800 [exp]	13.41	0.7746	Pt-PNATH.1
AT5G47610			RING/U-box superfamily protein...		Potri.001G453800 [exp]	14.86	0.7598
AT1G78290		SRK2C, SNRK2-8,...	SNF1-RELATED PROTEIN KINASE 2C...		Potri.002G099700 [exp]	15.49	0.7966
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Potri.001G060000 [exp]	16.73	0.7885

Compare expression of checked genes

Potri.005G246000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.