Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27280 225 / 6e-75 Zim17-type zinc finger protein (.1) AT1G68730 80 / 1e-18 Zim17-type zinc finger protein (.1) AT3G54826 48 / 1e-06 Zim17-type zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G015900 [exp] 284 / 4e-98 AT5G27280 219 / 2e-72 Zim17-type zinc finger protein (.1) Potri.010G132400 [exp] 75 / 1e-16 AT1G68730 139 / 1e-42 Zim17-type zinc finger protein (.1) Potri.008G037300 [exp] 50 / 3e-07 AT3G54826 173 / 2e-54 Zim17-type zinc finger protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021838 [exp] 249 / 4e-84 AT5G27280 216 / 3e-71 Zim17-type zinc finger protein (.1) Lus10034555 [exp] 247 / 4e-83 AT5G27280 216 / 2e-71 Zim17-type zinc finger protein (.1) Lus10034401 [exp] 75 / 1e-16 AT1G68730 130 / 1e-38 Zim17-type zinc finger protein (.1) Lus10019154 [exp] 73 / 1e-16 AT1G68730 119 / 2e-35 Zim17-type zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05180 [poplar] [flax] zf-DNL DNL zinc finger
Representative CDS sequence Show only first row Show all	>Potri.005G246200.1 pacid=42803528 polypeptide=Potri.005G246200.1.p locus=Potri.005G246200 ID=Potri.005G246200.1.v4.1 annot-version=v4.1 ATGGAAACTCTGAGCTCCTCTGCAGCAATCGTCTCATCCTCCTCTTCTCCTCTATCCTTCTTCTCTCCAAAACGAAAGGAATTGAATTCCCCTCCTAGAC TTCTCCGATTCCACACCTCTTCAAAAAAGGATAACAAAGATTCGGATCTCCAATCCAACTCTAATGATTCCAGCATCGTCCCTCTCTTCAGCAACCCCAC GCTCTCCAAGGATGCGGCGATGGGATTGGTATTGAGCGCGGCATCTGTGAGAGGATGGACTACAGGTTCAGGCATGGAAGGACCTTCAGTGCCAGCTGGA GCCGAGGACGGATCCAATACGGAGAAGGTCTCGACTCTCCCGTGGTCTCTCTTCACGAAATCACCACGTAGGCGAATGCGCGTGGCGTTTACTTGCAATG TTTGTGGTCAGAGAACTACTCGCGCTATAAATCCCCATGCTTACACTGACGGCACCGTCTTCGTTCAATGTTGTGGTTGCAATGTGTTTCATAAGCTAGT GGATAATCTGAACTTGTTTCACGAGATGAAGTGCTACGTGAACCCTAGCTTTAATTATCGAGATGCGAAGTGGGATGGTGGATTCAAGTTGTTTGATATG GATGATGATGATGATCATCAGGATCAGGATGGTGGCGGCGACATGTTTCCGATGTAA
AA sequence Show only first row Show all	>Potri.005G246200.1 pacid=42803528 polypeptide=Potri.005G246200.1.p locus=Potri.005G246200 ID=Potri.005G246200.1.v4.1 annot-version=v4.1 METLSSSAAIVSSSSSPLSFFSPKRKELNSPPRLLRFHTSSKKDNKDSDLQSNSNDSSIVPLFSNPTLSKDAAMGLVLSAASVRGWTTGSGMEGPSVPAG AEDGSNTEKVSTLPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSFNYRDAKWDGGFKLFDM DDDDDHQDQDGGGDMFPM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27280			Zim17-type zinc finger protein...		Potri.005G246200 [exp]	0	1
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Potri.007G079600 [exp]	1.41	0.9737
AT5G38060			unknown protein		Potri.017G122500 [exp]	3.60	0.9510
AT3G23360			Protein phosphatase 2C family ...		Potri.010G070100 [exp]	5.19	0.9538
					Potri.001G278504 [exp]	5.91	0.9383
AT2G29150			NAD(P)-binding Rossmann-fold s...		Potri.005G039500 [exp]	6.08	0.9380
AT4G32480			Protein of unknown function (D...		Potri.013G100500 [exp]	6.32	0.9572
AT3G60590			unknown protein		Potri.014G061000 [exp]	6.48	0.9549
AT1G27385			unknown protein		Potri.001G056500 [exp]	8.12	0.9617
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.013G056500 [exp]	8.36	0.9534
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Potri.018G063901 [exp]	8.48	0.9511

Compare expression of checked genes

Potri.005G246200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.