Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14390 58 / 5e-09 Pyridoxal-dependent decarboxylase family protein (.1) AT5G11880 55 / 6e-08 Pyridoxal-dependent decarboxylase family protein (.1) AT4G34710 42 / 0.0005 SPE2, ADC2, ATADC2 arginine decarboxylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G015800 [exp] 638 / 0 AT5G11880 54 / 1e-07 Pyridoxal-dependent decarboxylase family protein (.1) Potri.009G119300 [exp] 57 / 1e-08 AT5G11880 815 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1) Potri.004G157500 [exp] 56 / 3e-08 AT5G11880 815 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004154 [exp] 438 / 2e-153 AT5G11880 53 / 2e-07 Pyridoxal-dependent decarboxylase family protein (.1) Lus10005629 [exp] 278 / 6e-93 ND / Lus10042305 [exp] 57 / 9e-09 AT5G11880 806 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1) Lus10023548 [exp] 51 / 1e-06 AT5G11880 809 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1) Lus10040433 [exp] 51 / 1e-06 AT5G11880 813 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00278 [poplar] [flax] Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-terminal sheet domain CL0036 [poplar] [flax] TIM_barrel PF02784 [poplar] [flax] Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G246300.1 pacid=42804600 polypeptide=Potri.005G246300.1.p locus=Potri.005G246300 ID=Potri.005G246300.1.v4.1 annot-version=v4.1 ATGGGGTCGATCCCTAAGAACCCCCACGCCGGTGTTCTGTTGGGTGCACCGGGTGTTAAGGGAAAGAGGGTCACAACCATATCAAAAAATGGCCTGACTG AATTTATGCTGTCAATAATCTCAAAAAAACAAGAAACCAAAGAGCCATTTTACGTCCTTGATTTAGGAGAGGTCACTGCCCTCATGGACAAGTGGTTAAT GACTCTTCCCATGGTACATCCCTTCTACGCCGTCAAGTGCAATCCTGACCCGGCTCTCCTTGGTTCGTTGGCGGCTCTTGGCTCAAACTTTGATTGTGCA AGCCGGGCCGAGATCGAATCCGTTCTATCCCTCGGAGTTTCTCCGAATCGGATCGTCTATGCGAATCCGTGCAAGCAAGAATCCCACATCAAATACGCTG CAAGTGTGGGCGTTAATTTAACTACTTTTGATTCAAAGGAAGAGCTTGACAAGATTCGGAAATGGCATTCGAAGTGTGCATTGCTCATTCGGATTAAAGC CCCTGATGACAGTGGAGCGAGGTGTCCCTTAGGTCCCAAATATGGCGCACTTCCTGACGAAGTCACGCCTCTTCTCCAAGCCGCTCAAACCGCTCAGCTC AATGTAGTTGGTGTTTCTTTCCATATAGGAAGCGGAGCCACACGCTCTCGAGCATACGAAGGAGCCATAGCTTCGGCTAAATCTGTATTTGAAGCCGCAG TTCGTCTTGGCATGCCTGGAATGAAGATACTAAACATTGGCGGCGGCTTCACGGCCGGATCCCAGTTCGATGAAGCAGCAACAACAATCAAATCCGCCCT CCAAGCTTATTTCCCAAACGAACCGGGCTTGACAGTCATTTCTGAACCGGGCCGGTTTTTTGCTGAGTCGGCTTTCACGTTAGCCACCAACATTATAGGA AAACGTGTCAGAGGTGACTTAAGAGAGTATTGGATTAATGACGGTATTTACGGCTCCATGAACTGTATTTTATACGATCATGCAACTATCACCTGCACGC CTCTCGCTTGCAATTCCAATCATGCGAATCTCACGTGCAAAGGGTTAAGAGCTTATAGCTCGACGGTTTTTGGACCAACATGTGATGCTCTTGACACGGT TTTGACGGGTCATCAGTTGCCGGAACTGCAGATTAATGACTGGCTTGTCTTCCCTAACATGGGTGCTTATACGGCAGCTGCTGGGTCAAGTTTCAACGGG TTCAACACAGCAGCCATTTTGACACACCTTGCCTCCTCGAATATGAACTAG
AA sequence Show only first row Show all	>Potri.005G246300.1 pacid=42804600 polypeptide=Potri.005G246300.1.p locus=Potri.005G246300 ID=Potri.005G246300.1.v4.1 annot-version=v4.1 MGSIPKNPHAGVLLGAPGVKGKRVTTISKNGLTEFMLSIISKKQETKEPFYVLDLGEVTALMDKWLMTLPMVHPFYAVKCNPDPALLGSLAALGSNFDCA SRAEIESVLSLGVSPNRIVYANPCKQESHIKYAASVGVNLTTFDSKEELDKIRKWHSKCALLIRIKAPDDSGARCPLGPKYGALPDEVTPLLQAAQTAQL NVVGVSFHIGSGATRSRAYEGAIASAKSVFEAAVRLGMPGMKILNIGGGFTAGSQFDEAATTIKSALQAYFPNEPGLTVISEPGRFFAESAFTLATNIIG KRVRGDLREYWINDGIYGSMNCILYDHATITCTPLACNSNHANLTCKGLRAYSSTVFGPTCDALDTVLTGHQLPELQINDWLVFPNMGAYTAAAGSSFNG FNTAAILTHLASSNMN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14390			Pyridoxal-dependent decarboxyl...		Potri.005G246300 [exp]	0	1
AT3G54680			proteophosphoglycan-related (....		Potri.013G072200 [exp]	2.23	0.8665
					Potri.007G138750 [exp]	2.82	0.8045
AT5G15640			Mitochondrial substrate carrie...		Potri.017G098500 [exp]	4.69	0.8024
AT1G35520	ARF	ARF15	auxin response factor 15 (.1)		Potri.012G012950 [exp]	8.48	0.8406
AT2G21120			Protein of unknown function (D...		Potri.004G168900 [exp]	13.34	0.7157
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.010G070750 [exp]	14.14	0.7454
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Potri.001G105200 [exp]	14.79	0.8379	PtrcGpx3_1
AT1G78230			Outer arm dynein light chain 1...		Potri.005G164000 [exp]	15.09	0.7260
AT2G46620			P-loop containing nucleoside t...		Potri.002G175600 [exp]	18.16	0.8262
AT4G01840		KCO5, ATTPK5, A...	Ca2+ activated outward rectify...		Potri.014G113700 [exp]	18.81	0.7374

Compare expression of checked genes

Potri.005G246300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.