Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38470 214 / 4e-66 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT2G17700 210 / 8e-65 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 209 / 4e-64 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT1G76990 42 / 0.0004 ACR3 ACT domain repeat 3 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G246500 [exp] 416 / 6e-145 AT4G38470 645 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.002G015400 [exp] 352 / 8e-120 AT4G38470 650 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.009G139400 [exp] 242 / 9e-77 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 238 / 3e-75 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 219 / 7e-68 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.007G060600 [exp] 187 / 1e-55 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 137 / 6e-38 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 120 / 9e-32 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.002G070000 [exp] 105 / 8e-26 AT4G38470 498 / 1e-171 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005630 [exp] 251 / 4e-81 AT4G38470 514 / 8e-179 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10023989 [exp] 240 / 6e-76 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10012517 [exp] 236 / 3e-74 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10004153 [exp] 244 / 6e-74 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10041845 [exp] 228 / 4e-71 AT4G35780 791 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10025092 [exp] 228 / 3e-68 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10022653 [exp] 159 / 7e-46 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10028590 [exp] 115 / 3e-29 AT4G35780 506 / 9e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10028392 [exp] 112 / 8e-29 AT4G35780 445 / 2e-153 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10018895 [exp] 113 / 1e-28 AT4G35780 508 / 1e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G246400.2 pacid=42803426 polypeptide=Potri.005G246400.2.p locus=Potri.005G246400 ID=Potri.005G246400.2.v4.1 annot-version=v4.1 ATGGGAGACACAGAGAGTGGCAGCAGCGGAGCTGTAGATTTCGTGCCTCGAAACCAGAGGCAAAAGCTTGATGTTTTTAACGATGTTCTCTACCGACTTA AAGAATCGAATGATGAAGAAGCGAGTCGTCTTGGCTTTGAAGACGAACTCTGGGCTCATTTTTGTAGATTTCCTACTCGATATGCCATGGATGTGATTGC GGAGAGAGCAGAGGATGTTATTATGCATAAGAGATTGTTGCAGATGGCACATAATCCAGCTACTCGGCCGGCAATTGAAGTGCGACTTGTTCAGGTTCCT TTTCAATCTGATGGACATTCCGGTGATTCGGTAGATTCAGAATTGCAGCTTCAATATTTTGATTATCTTGGCAAACATAGCATTCATCCACCACCAGCCT TTGGTTCGTTATCCGATTCTGAACCTCTTCATAAATATCAGGATAAGGATATCACAGTGATTACCGGGCCACTTTGCTTCCGGCTGGTGCATGAAATTAC AATTTCAACTATTGATAAGCCAAAACTCCTGAGTCAGCTTACTTCCATACTGTCTGAGATCGGGCTCAACATTCAAGAAGCTCACGCCTTTTCCACAATA GATGGCTACTCCTTAGTCGTGTTTGTTGTTGATAATATGGCACTTGAGGACACAGAGCGGCTTAGAAGCATGGTGTTTAAGGAAATTCCAAAAATCGAGA GGGAGACGCTGATTCGAAGTGAGAGTTGA
AA sequence Show only first row Show all	>Potri.005G246400.2 pacid=42803426 polypeptide=Potri.005G246400.2.p locus=Potri.005G246400 ID=Potri.005G246400.2.v4.1 annot-version=v4.1 MGDTESGSSGAVDFVPRNQRQKLDVFNDVLYRLKESNDEEASRLGFEDELWAHFCRFPTRYAMDVIAERAEDVIMHKRLLQMAHNPATRPAIEVRLVQVP FQSDGHSGDSVDSELQLQYFDYLGKHSIHPPPAFGSLSDSEPLHKYQDKDITVITGPLCFRLVHEITISTIDKPKLLSQLTSILSEIGLNIQEAHAFSTI DGYSLVVFVVDNMALEDTERLRSMVFKEIPKIERETLIRSES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.005G246400 [exp]	0	1
AT5G37970			S-adenosyl-L-methionine-depend...		Potri.017G122000 [exp]	3.16	0.9690
AT4G37420			Domain of unknown function (DU...		Potri.005G252100 [exp]	5.47	0.9417
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Potri.013G092400 [exp]	5.65	0.9641	NAC064
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Potri.015G143400 [exp]	5.91	0.9604
AT2G45220			Plant invertase/pectin methyle...		Potri.002G145500 [exp]	7.48	0.9624	Pt-PE9.2
AT2G45360			Protein of unknown function (D...		Potri.014G068900 [exp]	8.36	0.9594
AT5G37990			S-adenosyl-L-methionine-depend...		Potri.017G121800 [exp]	8.66	0.9627
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036700 [exp]	9.79	0.9598
AT5G60920		COB	COBRA-like extracellular glyco...		Potri.017G098600 [exp]	11.40	0.9519
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Potri.001G018400 [exp]	14.14	0.9530	RAP21

Compare expression of checked genes

Potri.005G246400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.