Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53470 645 / 0 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT1G78610 627 / 0 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT3G14810 613 / 0 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT2G17000 597 / 0 Mechanosensitive ion channel family protein (.1) AT5G12080 424 / 7e-137 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT2G17010 410 / 4e-131 Mechanosensitive ion channel family protein (.1) AT5G19520 390 / 7e-124 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1) AT1G49260 49 / 1e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G105500 [exp] 681 / 0 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.001G384100 [exp] 675 / 0 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.004G178900 [exp] 671 / 0 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.006G144100 [exp] 470 / 2e-154 AT5G12080 611 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G222500 [exp] 437 / 3e-141 AT5G12080 766 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G073000 [exp] 417 / 8e-135 AT5G12080 536 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G072800 [exp] 394 / 7e-126 AT5G12080 512 / 2e-172 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.014G088200 [exp] 43 / 0.001 AT4G00290 580 / 0.0 Mechanosensitive ion channel protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038148 [exp] 685 / 0 AT1G53470 983 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10042499 [exp] 676 / 0 AT1G53470 985 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10004153 [exp] 664 / 0 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10005556 [exp] 609 / 0 AT1G53470 758 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10025092 [exp] 603 / 0 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10023990 [exp] 594 / 0 AT1G78610 762 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10022654 [exp] 580 / 0 AT1G78610 817 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10013692 [exp] 437 / 3e-147 AT1G53470 496 / 6e-170 mechanosensitive channel of small conductance-like 4 (.1) Lus10016423 [exp] 446 / 2e-145 AT5G12080 786 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10019694 [exp] 444 / 9e-145 AT5G12080 778 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [poplar] [flax] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Potri.005G246600.2 pacid=42803490 polypeptide=Potri.005G246600.2.p locus=Potri.005G246600 ID=Potri.005G246600.2.v4.1 annot-version=v4.1 ATGCTGCACTATCAAAATTCGAATCTTTCTCTATCGACTACTGTAGTTTACATGCTTAAAAGTACTTCATATCAGTATTTATTACCCACACGAGGCCTTG AAGATTTCCCTAAGGATCCTGTAATGGAAGGCTTGAGAAAATCCCTCAAATCTTATGGTACTCAGGCTAAGCAACAACCAGAGCACCTAGAAAAAGAAAA ACAAGCTCTACTCCACCATGGCAGAGATTGTCACATTGCCCAGTTCTCTGGTTCGTTTGGCCAGGATGAGGAAGTTATTGTCAACGTCGACAATATTGTT GATGTTTCTGACAAAGAAACCACTATTGCTTCAAAATCCTGCAGTGGAAGTCCAAGCAGGAAAGCTACAGGGTCAGCAAATAAATTCAAAGTGTCGTTTG AGGACGTAATTCATGAAGCTGTCCGGGAAAGAAGCAAGGACTCGCACCAACCATCTTTCAGTGCTCTTGAGCAAAATTCATGGAGGTTAGTCGTGAACAA GGCGAAGTCCAGATTGATAGACCAGCCTGAGGAACACTATCAAAGAACTGAGAGAACGGTGAACTCTGATGGAGCTTTGGGTGAAGAAGATGACGATGAA GACATCCCAGAAGAATATAGGAACATAAAACATAACACGTTGATAATGCTGCAATGGGTGAGTCTTGTTTTAATCATAGCAGCTTTAGTTTGTAGTCTGT CCATTCCTGTATTAAAGAGGCAAACATTGTGGGATCTTTCACTATGGAAATGGGAGATAATGGTTTTGGCACTTATCTCTGGTCGTTTGGTGTCTGGTTG GGGAATTAAGCTTGTTGTTATCTTCATCGAAAGCAATTTTCTTTTGCGGAAACGGGTTCTGTATTTCGTTTATGGGTTGAGGAGGGCCGTTCAGAATTGC CTCTGGTTGGGTTTGGTCTTGCTTATTTGGCACTTGACTTTTGATGACAAGGTTGAGAAGAGCAAGAGCAAGATATTGCTTTATGGGACCAAGATTCTGG TGTGTTTCTTTATAGGAACATTAATATGGCTTTTGAAAACCCTCCTTGTTAAGGTTCTTGCTTCATCCTTCCATGTCAATGCGTTCTTCGAACGAATCCA GGAGGCTCTGTACAATCAATATGTAATCGAGTCACTCTCTGGTTCTCCATTCCCTGAATGGCGAAGCACCAAGGAAGAGGTAGGGGCGGTCACCGGGGTT CAGCAAATAAGAAATTCCGGGCCTGCCAGTCCCGGTCCTGGTGATTTCAAGGAAACTCTCCTTGCAAAGGAAGGTCGTGGAAAGCTACAAAGATGCACCA CGGTTGGGAAGAAACCTAGATTTTCTAACAGAACGCCTAACAAGAAAGATGAAGAGATTCCAATTGACAAGATGCAAAAGCTAAACCATATGAATATATC AGCTTGGAATATGACGAGGATGATAAATATCGTCCGCCATGGTGCCTTGTCTACTTTAGATGAGCATATACTTGATTCAGACATCAAAGATGACTCTTTA CTGCATATCAGAAGTGAGTGCCAAGCAAAAGAGGCAGCCAGGAAAATATTTCAGAAGGTGGCTAAGACAGGAAGCCACCAGATTTACCTTGATGACATGA CTCGCTTTATGAATAAAGAAGCAGCATTTAAAGCAATGCATCTCATGGGAATAACACGCGAGGATGAAGGAATAAGCAAGTCATCTCTCAAGTCCTGGCT GGTTAACGCATTCAGAGAGCGAAGAGCACTGGCATTATCTCTCAATGACACAAAAACAGCCGTCGATGAACTTCACAATATGTTGAGCATCCTCGTCAGC GTCATTATTCTGATAATCTGGCTCATTATACTTGGAATTCCTATCTCTCACTTCCTAGTCTTCATAAGTTCCCAGCTTCTGTTGGTGGTGTTCATCTTTG GAAATACTTGCAAGACCGTGTTTGAAGCAATCATATTCTTGTTCATAATGCACCCATTTGACGTGGGTGATCGCTGCGAGATCGATGGAATCCAGCTGAG AGTTGAAGAGATGAATATATTAACGACAGTGTTTTTGAGGAGCGATAACCAGAAGATCGTATATCCCAACAGTGTTCTAGCAAGCAAGCCTATCGGTAAC TTCTATCGCAGTCCAGATATGACGGAGGCAATTGATTTCTCTGTCCACATCTCCACTCCGATGGAGAAGATTGCTAGCCTGAAAGACAAAATAAAAGGGT ATGTTGAAGGAAACAGTAACCACTGGCATCAAAATCCAATGGTGGTCGTGACAGATGTTGAGGACATGAACAAAATGAAGATGTCACTTTGGGTCACGCA CAGGATGAACCATCAGGAAATGGAGGAGAGATGGGTCAGGAGAAATCTTCTCCTAGGAGAAATGATCAAAGTGTTCAAAGAGCTCGATATTGAATATCGC GTGCTGCCCTTGGATGTGAATATCAGAAACATGCCGCCTTTGGTCTCGAACAGGCTGCCCTCAAACTGGACCACTTGTGCCAATTAA
AA sequence Show only first row Show all	>Potri.005G246600.2 pacid=42803490 polypeptide=Potri.005G246600.2.p locus=Potri.005G246600 ID=Potri.005G246600.2.v4.1 annot-version=v4.1 MLHYQNSNLSLSTTVVYMLKSTSYQYLLPTRGLEDFPKDPVMEGLRKSLKSYGTQAKQQPEHLEKEKQALLHHGRDCHIAQFSGSFGQDEEVIVNVDNIV DVSDKETTIASKSCSGSPSRKATGSANKFKVSFEDVIHEAVRERSKDSHQPSFSALEQNSWRLVVNKAKSRLIDQPEEHYQRTERTVNSDGALGEEDDDE DIPEEYRNIKHNTLIMLQWVSLVLIIAALVCSLSIPVLKRQTLWDLSLWKWEIMVLALISGRLVSGWGIKLVVIFIESNFLLRKRVLYFVYGLRRAVQNC LWLGLVLLIWHLTFDDKVEKSKSKILLYGTKILVCFFIGTLIWLLKTLLVKVLASSFHVNAFFERIQEALYNQYVIESLSGSPFPEWRSTKEEVGAVTGV QQIRNSGPASPGPGDFKETLLAKEGRGKLQRCTTVGKKPRFSNRTPNKKDEEIPIDKMQKLNHMNISAWNMTRMINIVRHGALSTLDEHILDSDIKDDSL LHIRSECQAKEAARKIFQKVAKTGSHQIYLDDMTRFMNKEAAFKAMHLMGITREDEGISKSSLKSWLVNAFRERRALALSLNDTKTAVDELHNMLSILVS VIILIIWLIILGIPISHFLVFISSQLLLVVFIFGNTCKTVFEAIIFLFIMHPFDVGDRCEIDGIQLRVEEMNILTTVFLRSDNQKIVYPNSVLASKPIGN FYRSPDMTEAIDFSVHISTPMEKIASLKDKIKGYVEGNSNHWHQNPMVVVTDVEDMNKMKMSLWVTHRMNHQEMEERWVRRNLLLGEMIKVFKELDIEYR VLPLDVNIRNMPPLVSNRLPSNWTTCAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53470		MSL4	mechanosensitive channel of sm...		Potri.005G246600 [exp]	0	1
AT2G20560			DNAJ heat shock family protein...		Potri.007G135900 [exp]	2.44	0.8603
AT1G65780			P-loop containing nucleoside t...		Potri.017G140200 [exp]	4.89	0.8399
AT5G53760		ATMLO11, MLO11	MILDEW RESISTANCE LOCUS O 11, ...		Potri.011G121600 [exp]	5.74	0.8531
					Potri.001G098901 [exp]	6.63	0.8140
					Potri.005G078500 [exp]	8.30	0.8674
AT3G27027			Protein of unknown function (D...		Potri.001G328701 [exp]	8.36	0.8359
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G187900 [exp]	9.16	0.8300
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.002G123000 [exp]	10.95	0.8086	Pt-CYCD1.3
AT5G45580	GARP		Homeodomain-like superfamily p...		Potri.001G133400 [exp]	18.33	0.7722
AT5G27690			Heavy metal transport/detoxifi...		Potri.005G026100 [exp]	18.76	0.8378

Compare expression of checked genes

Potri.005G246600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.