Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76110 350 / 1e-120 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT1G04880 232 / 8e-73 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT3G13350 180 / 3e-54 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT1G55650 154 / 3e-44 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT2G17410 50 / 1e-06 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2) AT1G20910 47 / 2e-05 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1) AT1G76510 44 / 0.0002 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G055200 [exp] 241 / 5e-76 AT1G04880 364 / 3e-122 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.001G315200 [exp] 225 / 2e-70 AT1G04880 376 / 6e-128 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.011G168800 [exp] 202 / 5e-63 AT3G13350 307 / 3e-104 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.011G145450 [exp] 49 / 3e-06 AT2G17410 423 / 3e-140 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.003G126600 [exp] 46 / 4e-05 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.001G456500 [exp] 45 / 4e-05 AT2G17410 420 / 3e-139 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.004G208900 [exp] 45 / 6e-05 AT2G17410 416 / 6e-137 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.002G003700 [exp] 44 / 0.0001 AT1G76510 451 / 5e-157 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021228 [exp] 351 / 1e-120 AT1G76110 375 / 4e-130 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10005636 [exp] 239 / 5e-77 AT1G76110 273 / 2e-90 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10016671 [exp] 239 / 2e-75 AT1G04880 365 / 5e-123 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10007127 [exp] 234 / 3e-73 AT1G04880 376 / 3e-127 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10008495 [exp] 44 / 0.0002 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10001618 [exp] 43 / 0.0004 AT2G17410 395 / 4e-129 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Lus10022981 [exp] 42 / 0.0005 AT2G17410 395 / 1e-128 ARID/BRIGHT DNA-binding domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [poplar] [flax] HMG-box PF00505 [poplar] [flax] HMG_box HMG (high mobility group) box CL0123 [poplar] [flax] HTH PF01388 [poplar] [flax] ARID ARID/BRIGHT DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G246700.2 pacid=42804976 polypeptide=Potri.005G246700.2.p locus=Potri.005G246700 ID=Potri.005G246700.2.v4.1 annot-version=v4.1 ATGTCGCCGGGCAGTAAGAGAAAATTCAAGGCTGGAATGGAAAACAAGCACTACCCTGCGCCTCTTGCCTCTCATGAAGATGTTGTTAACGACCCTTCTG TTTTTTGGGACACTCTCAGGCGCTTTCATTTTGTAATGGGCACCAAATTTATGATACCTGTGATTGGAGGGAAGGAGCTAGATTTGCAAGTTTTATATGT AGAGACAACTAACAGGGGTGGTTATGATAAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTGGGTTCTGTGTTTTGTTTCTCTGCAACAACAACAAGTGCT TCTTTTGTATTGAAGAAACACTACTTTAGCCTCCTTTATCATTACGAACAGGTCCACTTCTTCAAGATCCAGGGTCCAGTCTCTACTCCAGCAGTTGCAT TTCCTCTTGGCAGCCCTTCAAGCAAAACTGAACTGGCTATTGTGGAATATTCTCCAGAACCCATAAGGGATTGTCCTGATCCGTCTACCGAAAGCTCTTC GTCTTTTTCAGCCAGTGGGACAATAGAAGGGAAATTTGATTGTGGTTACCTGGTCTCGGTGCAATTAGGTTCAGAGGTTCTCCATGGAGTGCTTTACCAT CCTGACCAGCAGGACTTGTCTAATTCTATTCCTCAATATGATGGTGCCATTGTCCCATACACTCCCAACCGCAGGCGTCGGAGGAGGAGAAGCAGAAGAT CGGGGGATCCCAGCTACCCCAAACCCAACAGGAGTGGCTACAACTTCTTCTTTGCTGAGAAACACTATAAGCTGAAATCGCTTTACCCCAATAGAGAAAG GGAGTTTACAAAAATGATAGGCCAGTCATGGAGCAGTCTCAGCGCAGAGGAGAGGATGGTTTACCAAAACATTGGCTTGAAAGACAAGGAAAGATACAAG AGAGAACTGAAAGAGTACAAGGAGAAACTTCAGCTCAGGCAAGCCATGGAAGTGGAGCTGAATATTAAAGCTCAAGACGTTCAGGATTGA
AA sequence Show only first row Show all	>Potri.005G246700.2 pacid=42804976 polypeptide=Potri.005G246700.2.p locus=Potri.005G246700 ID=Potri.005G246700.2.v4.1 annot-version=v4.1 MSPGSKRKFKAGMENKHYPAPLASHEDVVNDPSVFWDTLRRFHFVMGTKFMIPVIGGKELDLQVLYVETTNRGGYDKVVAEKKWREVGSVFCFSATTTSA SFVLKKHYFSLLYHYEQVHFFKIQGPVSTPAVAFPLGSPSSKTELAIVEYSPEPIRDCPDPSTESSSSFSASGTIEGKFDCGYLVSVQLGSEVLHGVLYH PDQQDLSNSIPQYDGAIVPYTPNRRRRRRRSRRSGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGQSWSSLSAEERMVYQNIGLKDKERYK RELKEYKEKLQLRQAMEVELNIKAQDVQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76110	ARID		HMG (high mobility group) box ...		Potri.005G246700 [exp]	0	1
AT1G45110			Tetrapyrrole (Corrin/Porphyrin...		Potri.002G030701 [exp]	1.73	0.9629
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.001G015400 [exp]	2.23	0.9645
AT2G29630		PY, THIC	PYRIMIDINE REQUIRING, thiaminC...		Potri.009G043200 [exp]	3.46	0.9640
AT5G22860			Serine carboxypeptidase S28 fa...		Potri.001G213200 [exp]	3.46	0.9479
					Potri.018G011950 [exp]	6.92	0.9523
AT1G10657			Plant protein 1589 of unknown ...		Potri.008G189100 [exp]	10.09	0.9391
AT2G29630		PY, THIC	PYRIMIDINE REQUIRING, thiaminC...		Potri.001G249200 [exp]	10.39	0.9519
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Potri.001G249800 [exp]	12.68	0.9531
AT1G35420			alpha/beta-Hydrolases superfam...		Potri.019G079000 [exp]	12.84	0.9547
AT5G59750			DHBP synthase RibB-like alpha/...		Potri.001G234900 [exp]	15.71	0.9473

Compare expression of checked genes

Potri.005G246700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.