Plant FIBer expression Database

Potri.005G246900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G246900.1 pacid=42804531 polypeptide=Potri.005G246900.1.p locus=Potri.005G246900 ID=Potri.005G246900.1.v4.1 annot-version=v4.1
ATGGGGAATTGCTTGCTCCTGCCAGTGAAATCTGATAAATGTTTCAGCAAGAAAAGTAATCCTGCGCTACCACCAGACCTTCCAGCCGAAGATAGCAATC
AAGTTAAGCTGCCGCCGCCGCCGCCACAGAAGTTATTCAACAGGGAAAACAATGGCAAACTAACTGAAGCTCAAGTTGAAGAAGGCCGTGGCGCTCTACT
GCTCCCACCCCAACAATGCAGGGAGGCAAGTAACCTTGAATCAGTTAAGGTTCACAGACAAATCGTAGCTAGAGTTGAAGAACGCACTGGCGCTCTTCTA
CTCCCACATCAAGTATTCGAGAAAGCAAGTAACCGTGAATCTGTTGATGCTCAAAAACAAACCAAAGCTCAAGTTGAAGAACGCGGCGGCGCTCTACTGC
TCCCACGCCAGCTAATAAAGAAAGCAAACAACTGTGGCCTAGTTGAAACTCAAGCTGGAAAACGCTATCCTGGTGTACTGCTTCCCCATGAATTTTTCCA
AGCAACTTTATGA
AA sequence
>Potri.005G246900.1 pacid=42804531 polypeptide=Potri.005G246900.1.p locus=Potri.005G246900 ID=Potri.005G246900.1.v4.1 annot-version=v4.1
MGNCLLLPVKSDKCFSKKSNPALPPDLPAEDSNQVKLPPPPPQKLFNRENNGKLTEAQVEEGRGALLLPPQQCREASNLESVKVHRQIVARVEERTGALL
LPHQVFEKASNRESVDAQKQTKAQVEERGGALLLPRQLIKKANNCGLVETQAGKRYPGVLLPHEFFQATL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G246900
[exp]
0 1
Potri.005G073733
[exp]
8.88 0.8242
AT2G32235 unknown protein Potri.004G028100
[exp]
9.48 0.8239
AT4G22820 A20/AN1-like zinc finger famil... Potri.015G131500
[exp]
10.48 0.8069
AT5G50810 TIM8 translocase inner membrane sub... Potri.012G103400
[exp]
14.14 0.7977
Potri.008G136566
[exp]
16.61 0.8154
AT4G24700 unknown protein Potri.012G086000
[exp]
26.03 0.8209
AT2G39370 MAKR4 MEMBRANE-ASSOCIATED KINASE REG... Potri.010G212800
[exp]
28.91 0.8065
Potri.005G241602
[exp]
37.09 0.7821
Potri.014G018801
[exp]
38.07 0.7905
AT2G39830 LRD3, DAR2 LATERAL ROOT DEVELOPMENT 3, DA... Potri.009G111446
[exp]
38.30 0.8071

Potri.005G246900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.