Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38430 554 / 0 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT5G02010 459 / 5e-157 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT5G05940 436 / 5e-147 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT3G55660 403 / 2e-134 ATROPGEF6, ROPGEF6 ROP (rho of plants) guanine nucleotide exchange factor 6 (.1) AT4G00460 367 / 7e-122 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2) AT1G01700 365 / 6e-121 ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 (.1) AT4G13240 365 / 1e-120 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1) AT3G24620 354 / 3e-116 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT1G79860 345 / 1e-112 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) AT1G52240 345 / 1e-111 PIRF1, ATROPGEF11, ROPGEF11 phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G014100 [exp] 843 / 0 AT4G38430 592 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.009G140100 [exp] 623 / 0 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.004G179742 [exp] 604 / 0 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.008G062000 [exp] 457 / 1e-154 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.006G092600 [exp] 451 / 1e-152 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.010G196000 [exp] 449 / 4e-152 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.016G104400 [exp] 448 / 2e-150 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.014G084200 [exp] 387 / 9e-130 AT4G00460 673 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.002G159700 [exp] 386 / 4e-129 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023983 [exp] 563 / 0 AT4G38430 696 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10025101 [exp] 563 / 0 AT4G38430 683 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10005644 [exp] 557 / 0 AT4G38430 520 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10021234 [exp] 555 / 0 AT4G38430 525 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10040248 [exp] 453 / 2e-153 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10004676 [exp] 448 / 1e-151 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10021500 [exp] 446 / 1e-149 AT5G02010 664 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10022601 [exp] 446 / 2e-149 AT5G02010 662 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10009874 [exp] 441 / 4e-149 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10000399 [exp] 431 / 3e-145 AT5G05940 630 / 0.0 ROP guanine nucleotide exchange factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [poplar] [flax] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Potri.005G247100.1 pacid=42805017 polypeptide=Potri.005G247100.1.p locus=Potri.005G247100 ID=Potri.005G247100.1.v4.1 annot-version=v4.1 ATGGGGAGTGTTTCATCGGAGGATTGGTTAGATCAAGTGAGCGAGAGGTTCGAGCTCGACAGTTACAGTTTGAGTGCGGATGTGAGCGGATCGGAGAGTG ACACTTCTAGTAGTAGCTTCTCATGCCGTCGTTACGATCTCCAAGGCGGCGCTTCCACTTCTTTCACTTCTTCGACTCCTGATTTCGCCGGTAATTCCGT TTCTCCTCTGCCGCTTCCGGTGATGCTACCGGTTGTTGGTGATAGACATGTTGCTGCTAGTCCCGATGAGATGGAAGAGAAACCGGAGACTGACTTGTCC GAAATTGCACTGATGAAGGAGCGGTTTGCTAAGCTTCTGCTTGGAGAAGACATGTCAGGTGGAGGACAGGGAGTTTGCACCGCCGTCGCCATCTCCAATG CCATCACCAATCTTTCTGCTTCTGTGTTTGGGGAGCTATGGAGATTAGAGCCATTAGCGCCACAAAGAAAGGTAATGTGGCAGCGAGAGATGGAATGGCT TTTATGCATAAGTGATTCCATAGTAGAGCTTGTACCATCAATGCAGGAATTTCCTGGTGGTGGGACTTATGAGGTTATGGTGCCTCGGCCACGTTCGGAT TTATATGTGAACCTCCCGGCACTCAAGAAGCTTGATGCAATGCTGATTAGCATTCTTGATCTGTTTTCTGAATCTGAATTTTGGTATGTTGATCGTGGGA TAGTAGTTGCTGGTGATGATGATGTGGAGGAACTTCCCATGTCTTCCTCTTTGAGAAGACCATCAATCAGACAGGAAGAAAAATGGTGGCTTCCTTTCCC TAAAGTTCCCCTGGCTGGTTTGTCGGAAGACACAAGAAAGAAGCTGCAGCAGTGTAGGGAGTGCACAAGCCAGATCCTTAAGGCTGCGTTGGCAATTAAC AATAGTGTGTTAGCTGAGATGGAAATCCCAGATACTTATTTTGAGAGCTTGCCCAAGAGTGGAAAAGCTTGCTTAGGCAGAATCATGTATCATTATATAA CTGCCAAACACTTCTCCCCAGATTATCTTTTGGATTACTTAGACTTGTCATCAGAATACACCACTTTGGAAATAGCAAATCGGATAGAGGCTGCCACGCA TTTCTGGAGCCAAAGTTACCAGAACAAGCACTTAATTCGTGCAAGGAATGGGAAGTCATCATGGAGTGGCAAGGTGAAAGGATTTGTTGGTGAAATACCC AAAAGAAAACTTCTAGCAAAACGAGCCGAGGTTCTCATACATAACCTAAGGCTACGTTTTCCTGGCCTCCCACAGACTGCTCTAGATGTAAACAAGATCC AATATAACAAGGATGTAGGGCATGCTATCATGGAGAGCTATTCTAGGGTGATGGAAAGCTTGGCCTTCAACATAATGGCAAGAATTGATGATCTCCTATA TGTGGATGATGCCACCAAGCAACGTGCAACAACAGAGTCAGCATCTCCTTGTTTTCAGGGACAGTGTGGTAGTAGACCATCCAAACAAAAGTGGATATCA TCTAGCCATGCTTCTTTTCAACACGGTCCTTGTTCCTCCGCATTGACTGTGCCAACTGTCGGCTCTTCCAGTGAAGTAATCAGGATTACTAATGGAAGGA AACCCCATTCTTTGAAGAAGAGCAATTTAAGGGACTCGGTAGATCAGACTCTAGAGAAACTAACAGTTTGA
AA sequence Show only first row Show all	>Potri.005G247100.1 pacid=42805017 polypeptide=Potri.005G247100.1.p locus=Potri.005G247100 ID=Potri.005G247100.1.v4.1 annot-version=v4.1 MGSVSSEDWLDQVSERFELDSYSLSADVSGSESDTSSSSFSCRRYDLQGGASTSFTSSTPDFAGNSVSPLPLPVMLPVVGDRHVAASPDEMEEKPETDLS EIALMKERFAKLLLGEDMSGGGQGVCTAVAISNAITNLSASVFGELWRLEPLAPQRKVMWQREMEWLLCISDSIVELVPSMQEFPGGGTYEVMVPRPRSD LYVNLPALKKLDAMLISILDLFSESEFWYVDRGIVVAGDDDVEELPMSSSLRRPSIRQEEKWWLPFPKVPLAGLSEDTRKKLQQCRECTSQILKAALAIN NSVLAEMEIPDTYFESLPKSGKACLGRIMYHYITAKHFSPDYLLDYLDLSSEYTTLEIANRIEAATHFWSQSYQNKHLIRARNGKSSWSGKVKGFVGEIP KRKLLAKRAEVLIHNLRLRFPGLPQTALDVNKIQYNKDVGHAIMESYSRVMESLAFNIMARIDDLLYVDDATKQRATTESASPCFQGQCGSRPSKQKWIS SSHASFQHGPCSSALTVPTVGSSSEVIRITNGRKPHSLKKSNLRDSVDQTLEKLTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Potri.005G247100 [exp]	0	1
AT1G03010			Phototropic-responsive NPH3 fa...		Potri.014G133500 [exp]	2.00	0.8052
AT2G22140		ATEME1B	essential meiotic endonuclease...		Potri.007G077400 [exp]	3.74	0.7549
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Potri.002G190500 [exp]	10.09	0.7526	Pt-MSK.2
AT3G53850			Uncharacterised protein family...		Potri.006G090400 [exp]	13.22	0.7227
					Potri.006G071700 [exp]	13.78	0.7632
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Potri.004G061600 [exp]	15.62	0.7770
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Potri.002G029100 [exp]	16.79	0.7698
AT5G25510			Protein phosphatase 2A regulat...		Potri.018G073925 [exp]	16.97	0.7851
AT1G75060			unknown protein		Potri.014G041200 [exp]	18.54	0.7665
AT5G45540			Protein of unknown function (D...		Potri.015G113600 [exp]	19.97	0.7431

Compare expression of checked genes

Potri.005G247100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.