Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76140 1210 / 0 Prolyl oligopeptidase family protein (.1.2) AT1G20380 1190 / 0 Prolyl oligopeptidase family protein (.1) AT1G50380 194 / 3e-52 Prolyl oligopeptidase family protein (.1) AT1G69020 109 / 2e-24 Prolyl oligopeptidase family protein (.1) AT5G66960 80 / 4e-15 Prolyl oligopeptidase family protein (.1) AT5G36210 50 / 4e-06 alpha/beta-Hydrolases superfamily protein (.1) AT4G14570 50 / 7e-06 AtAARE, AARE acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G247300 [exp] 1394 / 0 AT1G76140 1206 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G013900 [exp] 1377 / 0 AT1G76140 1165 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G014000 [exp] 1355 / 0 AT1G76140 1217 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.007G001300 [exp] 214 / 5e-59 AT1G50380 1149 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.010G137801 [exp] 119 / 2e-27 AT1G69020 889 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.007G035900 [exp] 100 / 2e-21 AT5G66960 1087 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.008G160400 [exp] 54 / 4e-07 AT4G14570 971 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021235 [exp] 1217 / 0 AT1G76140 1184 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10034556 [exp] 1071 / 0 AT1G76140 1056 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10019994 [exp] 1040 / 0 AT1G76140 1008 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10034558 [exp] 571 / 0 AT1G76140 565 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10015387 [exp] 197 / 1e-52 AT1G50380 1096 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032920 [exp] 185 / 7e-49 AT1G50380 1018 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10026683 [exp] 139 / 1e-33 AT1G69020 785 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10004631 [exp] 128 / 4e-30 AT1G69020 830 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032378 [exp] 105 / 5e-23 AT1G69020 372 / 1e-116 Prolyl oligopeptidase family protein (.1) Lus10017568 [exp] 93 / 4e-19 AT5G66960 1124 / 0.0 Prolyl oligopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00326 [poplar] [flax] Peptidase_S9 Prolyl oligopeptidase family CL0186 [poplar] [flax] Beta_propeller PF02897 [poplar] [flax] Peptidase_S9_N Prolyl oligopeptidase, N-terminal beta-propeller domain
Representative CDS sequence Show only first row Show all	>Potri.005G247400.2 pacid=42803758 polypeptide=Potri.005G247402.1.p locus=Potri.005G247400 ID=Potri.005G247400.2.v4.1 annot-version=v4.1 ATGGCTCACCTCCTTCAAGTTCCAAACCAAACGGCAACGTTCTCACTCGCACACCACGCTTTCCCCTTATTTATTTCTCCCTCGAATCTCACCTCCCTCT TTACGCGCCACCTCCAAAATCTCATTCTACGAAGTCCCCCTCTCTCCTATTCTCTCCTTAGCGTAACCAAACAGCAACCTCAAAGAAGAAACGTCTTCAA TTCCGAGGTCTGTCCTCGTCAAAGACCAAGACCAAGACCAATGGGTTCCCTCTCAGCTCTTGACAAACCTTTACAGTATCCAATCGCTCGCCGAGACGAC GCTGTAATTGATGATTACCACGGTGTAAAAATCGCAGATCCTTATCGATGGCTTGAAGATCCTGACGCAGAGGAGGTAAAAGGGTTTGTCCGGGAGCAAG TAAAATTGACAGAATCAGTGTTAAATGCATGCGATACAAGAGAAAAACTTCGTGAGAAAATCACGAAGTTATTTGATCACCCGCGATATGACGCGCCGTT TAAGCGAGGGAACAAGTATTTTTACTTTCATAATACTGGGCTTCAAGCACAAAACGTCCTCTATGTGCAGGATAGTTTAGAGGGAGAGCCAGATGTTTTG CTTGATCCAAATGGGCTGAGTGAGGATGGGACGGTTTCATTGAATTCTGAAACGCTTTCGGTTAGTGAGGATGCTAAGTACTTGGCTTATGGGCTTAGTA CGAGTGGGAGTGATTGGGTTACAATCAAAGTCATGCGCGTGGAGGATAAGATAGTCGAGGCTGATACCTTAAATTGGGTTAAGTTTACCGGTGTTAGTTG GACGCATGACGGCAAAGGATTTTTCTATTGCCGTTATCCAAATCCCAAAGAGGGAGAAAACTTAGATGCTGGGATGGAGACTAATTCCAACCTTTATCAT GAGCTTTACTACCATTTCTTGGGTACGGATCAATCTGAAGATATACTGTGTTGGAGAGATCTGGAAAACCCCAAATACATGTTCGAAGCTGGTGTGACTG ATGATGGAAAGTATCTTCTCTTATATATTGAAGAGAGCTGTGATCCTGTCAACAAAGTATACTACTGTGATATGTCTGCATTTTCTGATGGCCTTGAAGG TTTTAAAGGAGGAAATAGCCTGCTCCCATTTATTAAGCTTGTTGATAACTTTGATGCAAAGTATCATGAGATTGCAAATGATGGCACATTGTTTACTTTC TTGACTAATAAAGATGCCCCTAAGTATAAAATAGTACGGGTAGATTTGAAGGAGCCGAGTAGTTGGATAGACGTTGTCCCAGAATCCGAAAAAGATGTTC TTGAATCGGCATATGCTGTTCATGGTGATAAAATGATTGTGAGTTACTTGAATGATGTGAAGCATGTTCTACAAATAAGGGATTTGAAAACAGGATCTCT GCTGCATCGGTTACCAATTGATATTGGCTCGGTTACTGGGATATCTGCACGGCGAGAGGATAGTACAGTATTTATTGAGTTTACTAGCTTTCTCACCTCT CGTATAATATATCAATGCAATTTAGACACTGAGGTTCCGGATGTGAAGATATTCCGTGAAATTAGCGTGCCAGGATTCAATCGCACAGAGTTTCAAGTGA ATCAGGTTTTTGTGCCTAGCAAGGATGGTACCAGGATTCCTATGTTTATTGTGGCCAAGAAGAATATAACGTTGGATGGGTCACACCCATGTTTGTTATA TGCCTATGGTGGATTTAACATTAGTATTACACCATCATTTAGTGTCAGTCGAATTGTTCTGACAAGGCATTTAGGTTCTGTTGTCTGCATTGCAAATATT CGTGGTGGTGGAGAATACGGTGAGGAATGGCATAAAGCGGGCTCACTTGCGAGAAAGCAGAATTGCTTTGATGACTTCATTTCAGCTGCTGAATACCTCG TATCTGCTGGTTATACCCAACCAAAGAAGTTGTGCATTGAAGGTGGAAGCAACGGCGGGCTGCTTGTTGGGGCTTGCATAAATCAGCGACCCGACCTCTT TGGTTGTGCTCTGGCTCATGTTGGTGTTATGGACATGCTGCGATTTCACAAGTTTACCATAGGTCATGCATGGACTTCTGACTATGGCTGTTCAGACAAG AAGGAAGAGTTCGATTGGCTAATCAAGTACTCGCCGCTGCATAATGTCCGCAGACCATGGGAACAACATCACGAACAACCTTCACAGTACCCACCCACCA TGCTATTGACTGCTGATCATGATGATCGAGTTGTGCCATTACACTCTCTGAAGCTGCTGGCTACCATGCAATATATTTTGTGCACGAGTTTGGAGAATAG TCCTCAGACAAATCCAATCATAGGTCGCATTGAGTGTAAGGCTGGACATGGAGCTGGACGCCCAACTAAAAAAAAGATCGATGAAGCCGCTGATACGTAT AGCTTCATGGCAAGGATGTTGGATGCGTCTTGGAACGAGTAA
AA sequence Show only first row Show all	>Potri.005G247400.2 pacid=42803758 polypeptide=Potri.005G247402.1.p locus=Potri.005G247400 ID=Potri.005G247400.2.v4.1 annot-version=v4.1 MAHLLQVPNQTATFSLAHHAFPLFISPSNLTSLFTRHLQNLILRSPPLSYSLLSVTKQQPQRRNVFNSEVCPRQRPRPRPMGSLSALDKPLQYPIARRDD AVIDDYHGVKIADPYRWLEDPDAEEVKGFVREQVKLTESVLNACDTREKLREKITKLFDHPRYDAPFKRGNKYFYFHNTGLQAQNVLYVQDSLEGEPDVL LDPNGLSEDGTVSLNSETLSVSEDAKYLAYGLSTSGSDWVTIKVMRVEDKIVEADTLNWVKFTGVSWTHDGKGFFYCRYPNPKEGENLDAGMETNSNLYH ELYYHFLGTDQSEDILCWRDLENPKYMFEAGVTDDGKYLLLYIEESCDPVNKVYYCDMSAFSDGLEGFKGGNSLLPFIKLVDNFDAKYHEIANDGTLFTF LTNKDAPKYKIVRVDLKEPSSWIDVVPESEKDVLESAYAVHGDKMIVSYLNDVKHVLQIRDLKTGSLLHRLPIDIGSVTGISARREDSTVFIEFTSFLTS RIIYQCNLDTEVPDVKIFREISVPGFNRTEFQVNQVFVPSKDGTRIPMFIVAKKNITLDGSHPCLLYAYGGFNISITPSFSVSRIVLTRHLGSVVCIANI RGGGEYGEEWHKAGSLARKQNCFDDFISAAEYLVSAGYTQPKKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRFHKFTIGHAWTSDYGCSDK KEEFDWLIKYSPLHNVRRPWEQHHEQPSQYPPTMLLTADHDDRVVPLHSLKLLATMQYILCTSLENSPQTNPIIGRIECKAGHGAGRPTKKKIDEAADTY SFMARMLDASWNE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76140			Prolyl oligopeptidase family p...		Potri.005G247400 [exp]	0	1
AT3G24170		ATGR1	glutathione-disulfide reductas...		Potri.001G050000 [exp]	2.00	0.7028	Pt-GR.2,PtrcGR2
AT4G24290			MAC/Perforin domain-containing...		Potri.001G305600 [exp]	6.00	0.7335
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Potri.010G192600 [exp]	9.79	0.6935
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.014G099000 [exp]	12.48	0.7015
AT5G48655			RING/U-box superfamily protein...		Potri.002G245500 [exp]	14.69	0.6773
AT1G54610			Protein kinase superfamily pro...		Potri.005G045500 [exp]	16.09	0.6308
AT4G33565			RING/U-box superfamily protein...		Potri.017G049300 [exp]	25.33	0.7217
AT2G14860			Peroxisomal membrane 22 kDa (M...		Potri.001G296400 [exp]	38.66	0.6723
AT4G38040			Exostosin family protein (.1)		Potri.010G197900 [exp]	45.95	0.6398
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Potri.004G035800 [exp]	47.85	0.6765

Compare expression of checked genes

Potri.005G247400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.