Plant FIBer expression Database

Potri.005G247500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G20410 541 / 0 Pseudouridine synthase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021236
[exp]
640 / 0 AT1G20410 519 / 0.0 Pseudouridine synthase family protein (.1)
Lus10005645
[exp]
569 / 0 AT1G20410 452 / 6e-156 Pseudouridine synthase family protein (.1)
PFAM info
Representative CDS sequence
>Potri.005G247500.1 pacid=42804774 polypeptide=Potri.005G247500.1.p locus=Potri.005G247500 ID=Potri.005G247500.1.v4.1 annot-version=v4.1
ATGTCTAGCGAGACTGAAGCTGCGCAATTTAGCAACGGCACCGATGCGGTGCAAGTTATCTCTCCAAACGATGATCACCGCGTCACCCCCGGCGACGATG
AGAGACGGCACCTCAACGACGCCGTTCGTTCTTTGCCTTCTCACGCTGTCAAAGACCTGCTCTCCGCTGGGGTGTGTATAAGATGCATATTTAGACTGTT
TGGGATCAGTGATCATGCTTATTTTCGCTCCTCTTTATCGCCTTCGGTGATGTGTAATATTCTCGGAGAGGGAGATTCAAGTAGTTCTGAATCTATGGAA
TCAGAACTCAAACCCGAAGTGTGCAGAATTTGTTTAGGTATCTTACAATTTATTTATCGCGATGAAAAAGAAATGCTGGTGAAAAGAAAGAATGGTGATG
AGTTAGCTGCATCAATTGCTGAGCTAACAAGGCAAGAAGGACATCAAATTGATGGTTTTTCTCTTGAAGTTTCAATACCGCCTATTATCTTCGAAAATGA
ACAAGCTGTTAGATTGTACATGAAAAAGAAGTATGGATCGGAGCTTTGGTTCCAAGAAAGGCTTTCTGAATGCATTTCTACAAAGGATGCCTTGAAGTTT
GCGATTGTGAATCCCCTTGAAATAATATTGGATGTTAAATCTGGCCCAAGCTATGTCCGCATCCGTTTGACATACACTGAAACGAAGCCATCAATCATAC
CTTCGAAATCAGTAGACAGGAATGGGGGTTCGAAGAGAAGAAAAACAGGGACAAACAATGGTTTGGACACTGTTCATGTTGAGTTAGTGGGGAATGGAAC
TGGTTGTTGTGATTTATCATTGGGTCAAGGAAGTCCTGCCTCTGGAAGGTCTTCTACTGGTTTGGCTGAACATGAATCTTCTGAATGCTCCAACTTCCCT
CTAGAGAGGGTCAATGAACCCTGCCACTTGGTTTTCCTATGCTACAGGACACCTATCTATTTTGGTGGGAGATATCTGAAGTTCTCTAGAAATGTGAGTC
AAACTCGTTGGATCATTGATGATGAAAGAATGGGAGAAGCATCCATTGAGGAGATAATAGGTGGTAACATTCTTCCAATGTGTCAAGGTGACAGTTACAA
GTTTCATGCTGCTGGTAGAGAGGATATCGATGTTCGGATGTTGGGTTCAGGCAGGCCTTTCCTGGTAGAGGTACAAAATGCACGCAAGGTCCCATCTGAG
GCTCTGGTAAAAGAAATAGAAACAAGGATGAATAACTTGGGGAATAAATTGGTAGGGGTGAAAAATCTTAGTCTAGTAACCAGTCATAGCTGGGACTTGA
TGCGTGAAGGGGAAGCAGAAAAGCAGAAGCAATATTCTGCACTGGTATGGATTTCACGACCACTTGAGGATGAAGACTTGCAGTGTATAGCTTCACACAA
AGATTTGCAAATTTTGCAGAGAACCCCAGTAAGGGTGCTTCACCGCCGGAGTCCGCTAGAACGCGGGAAGATTATACATTGGATGAAAATTGAGCAGATC
ACTGGTAGCTCTCAATATTTTCTTTTGCATCTATGTACCCAGGCTGGCACGTATATCAAAGAATTTGTTCACGGGGATCTAGGACGTACGCATCCAAGCA
TTGGATCGATTCTAAGATGCAGAGCAGAGATACTACAACTTGATGTTACCGACGTGAAAATGGATTGTTTTTTGGCTGAATAA
AA sequence
>Potri.005G247500.1 pacid=42804774 polypeptide=Potri.005G247500.1.p locus=Potri.005G247500 ID=Potri.005G247500.1.v4.1 annot-version=v4.1
MSSETEAAQFSNGTDAVQVISPNDDHRVTPGDDERRHLNDAVRSLPSHAVKDLLSAGVCIRCIFRLFGISDHAYFRSSLSPSVMCNILGEGDSSSSESME
SELKPEVCRICLGILQFIYRDEKEMLVKRKNGDELAASIAELTRQEGHQIDGFSLEVSIPPIIFENEQAVRLYMKKKYGSELWFQERLSECISTKDALKF
AIVNPLEIILDVKSGPSYVRIRLTYTETKPSIIPSKSVDRNGGSKRRKTGTNNGLDTVHVELVGNGTGCCDLSLGQGSPASGRSSTGLAEHESSECSNFP
LERVNEPCHLVFLCYRTPIYFGGRYLKFSRNVSQTRWIIDDERMGEASIEEIIGGNILPMCQGDSYKFHAAGREDIDVRMLGSGRPFLVEVQNARKVPSE
ALVKEIETRMNNLGNKLVGVKNLSLVTSHSWDLMREGEAEKQKQYSALVWISRPLEDEDLQCIASHKDLQILQRTPVRVLHRRSPLERGKIIHWMKIEQI
TGSSQYFLLHLCTQAGTYIKEFVHGDLGRTHPSIGSILRCRAEILQLDVTDVKMDCFLAE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G20410 Pseudouridine synthase family ... Potri.005G247500
[exp]
0 1
AT2G35920 RNA helicase family protein (.... Potri.016G068900
[exp]
6.32 0.6488
AT1G13570 F-box/RNI-like superfamily pro... Potri.014G039700
[exp]
7.14 0.7069
AT1G11420 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724... Potri.014G117800
[exp]
31.38 0.6470
AT5G37370 ATSRL1 PRP38 family protein (.1.2.3.4... Potri.004G075700
[exp]
32.55 0.6213
AT2G26280 CID7 CTC-interacting domain 7 (.1) Potri.018G047700
[exp]
37.94 0.6250
AT3G52660 RNA-binding (RRM/RBD/RNP motif... Potri.006G212400
[exp]
45.86 0.6315
AT2G21660 CCR2, ATGRP7, G... GLYCINE-RICH RNA-BINDING PROTE... Potri.009G116400
[exp]
51.20 0.5668
AT5G15270 RNA-binding KH domain-containi... Potri.017G085500
[exp]
59.66 0.5850
AT3G43590 zinc knuckle (CCHC-type) famil... Potri.004G193500
[exp]
70.65 0.5990
Potri.014G013200
[exp]
83.44 0.6078

Potri.005G247500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.