Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Ptr4CL14
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20510 794 / 0 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20500 701 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 692 / 0 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 671 / 0 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT1G20490 484 / 5e-168 AMP-dependent synthetase and ligase family protein (.1) AT5G63380 423 / 2e-142 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 420 / 2e-141 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 414 / 3e-139 AMP-dependent synthetase and ligase family protein (.1) AT3G21240 344 / 9e-112 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G65060 343 / 1e-111 4CL3 4-coumarate:CoA ligase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G012800 [exp] 960 / 0 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 441 / 1e-149 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.008G031500 [exp] 439 / 1e-148 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.017G033600 [exp] 437 / 5e-148 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094800 [exp] 426 / 1e-143 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.003G099700 [exp] 425 / 2e-143 AT4G19010 634 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G057000 [exp] 422 / 3e-142 AT5G63380 530 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G112800 [exp] 419 / 3e-141 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 409 / 3e-137 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015998 [exp] 819 / 0 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 817 / 0 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015999 [exp] 655 / 0 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10037934 [exp] 435 / 7e-147 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10036994 [exp] 431 / 7e-146 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10038667 [exp] 422 / 1e-141 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2) Lus10021431 [exp] 415 / 2e-139 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 414 / 4e-139 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10002791 [exp] 412 / 3e-138 AT5G63380 688 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 411 / 4e-138 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G248500.1 pacid=42804216 polypeptide=Potri.005G248500.1.p locus=Potri.005G248500 ID=Potri.005G248500.1.v4.1 annot-version=v4.1 ATGGCAGACAACAACAACCTCACAATCGACCCAAGAAGCGGGTTTTGCAAATCAAACTCTGTTTTCTACAGCAAACGCAAGCCAATCCCACTCCCACTAA CTGACTTCCTAGACGTCACCACCTTCATATCCTCCCGTCCTCACCACGGCAAAACAGCCTTCATCGACGCAGCTACCGGCCGCCACCTCTCCTTCAAAGA CCTATGGAAAGCAGTAGATTCCGTTTCCACTTGTCTCTACGACATGGGAATCCGCAAAGGCCACGTCATCCTCTTACTTTCTCCGAACTCCATCTTCTTC CCCATCGTTTGCCTCTCCGTCATGTCTTTAGGCGCTGTAATTACCACCACTAATCCTCTCAACACTCCTCGTGAAATCGCTAAACAAATTGCCAACTCGA AACCTTCACTCGCTTTCACTACTCCTGAACTCCTTGCCAAACTCACCGAGTCAAACTCAAACCTCACCATCATCCTCATAGACGATGGGATCACTGATGC CTCCACTAAAACAAACGCCAAAATTGTGACAACATTAAGTGAAATGGTAAAAAAAGAACCAAGTGGGATCCGAGTTAGAGAGCAAGTCAACCAGGATGAC ACAGCGACGCTACTCTACTCTTCAGGCACAACAGGAGAAAGCAAAGGTGTGGTGTCCTCACACAAGAACTTAATCGCTATGGTACAAACGATTGTTGAAC GGTTCAGATTAAACGAAGGAGATCACAAATTTATCTGTACGGTCCCGATGTTTCACATCTACGGTTTAGCAGCGTTTGCCACAGGAATTCTGGCAGCAGG GTCAACGGTCATCGTTCTCTCAAAATTCGAAATGGGGGAGATGTTATCGACGATTGTGAAATACCGGGCCACTTATTTACCACTCGTGCCGCCGATACTA GTAGCGCTGATCAACGGGGCTGATCAGTTACGGGAGAGGTATGATTTGAGTTCGTTGAATTTTGTTTTATCAGGCGGAGCTCCATTGAGTAAGGAAATGG TTGAAGGGTTTTCGGAGAAGTATCCAGGGGTTACGATTTTACAAGGTTATGGGCTCACTGAATCGGCGGGGATTGGTGCTTCGACGGATACGTTGGAGGA GAGTAGGAGGTATGGCACGGCAGGGCTATTGTCGCCAAACACGGAGGCCAAGATTGTGGACCCGGAGAGTGGTAACGCTTTGCTGGTGAACCAGACCGGT GAGCTTTGGCTTCGAGCTCCTTCTGTCATGAAAGGTTACTTTAGTAACGCTGAAGCTACTTCATCAACTATCGATTCAGAGGGATGGTTAAGAACAGGAG ATCTCTGCTACATTGATGATGATGGCTTCATTTTCGTGGTTGATCGGTTAAAGGAGCTGATTAAATACAAGGGTTATCAGGTCCCTCCGGCAGAACTAGA GGCATTGCTACTAACTCACCCAGAGATTTCTGATGCTGCTGTAATACCGTTTCCTGACGAGCAGGTCGGGCAGTTCCCCATGGCTTACGTGGTAAGAAAA GCTGGAAGTAAATTATCCGAGAAAGCTGTCATGGATTTCATAGCAGGACAGGTGGCGCCATACAAAAGAATTCGGAGAGTCGCATACGTTGCTGCCATAC CTAAGAATCCGTCTGGCAAGATTCTCCGAAAGGATCTTATCAAGCTCGCAACCTCCAAGCTCTGA
AA sequence Show only first row Show all	>Potri.005G248500.1 pacid=42804216 polypeptide=Potri.005G248500.1.p locus=Potri.005G248500 ID=Potri.005G248500.1.v4.1 annot-version=v4.1 MADNNNLTIDPRSGFCKSNSVFYSKRKPIPLPLTDFLDVTTFISSRPHHGKTAFIDAATGRHLSFKDLWKAVDSVSTCLYDMGIRKGHVILLLSPNSIFF PIVCLSVMSLGAVITTTNPLNTPREIAKQIANSKPSLAFTTPELLAKLTESNSNLTIILIDDGITDASTKTNAKIVTTLSEMVKKEPSGIRVREQVNQDD TATLLYSSGTTGESKGVVSSHKNLIAMVQTIVERFRLNEGDHKFICTVPMFHIYGLAAFATGILAAGSTVIVLSKFEMGEMLSTIVKYRATYLPLVPPIL VALINGADQLRERYDLSSLNFVLSGGAPLSKEMVEGFSEKYPGVTILQGYGLTESAGIGASTDTLEESRRYGTAGLLSPNTEAKIVDPESGNALLVNQTG ELWLRAPSVMKGYFSNAEATSSTIDSEGWLRTGDLCYIDDDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEISDAAVIPFPDEQVGQFPMAYVVRK AGSKLSEKAVMDFIAGQVAPYKRIRRVAYVAAIPKNPSGKILRKDLIKLATSKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.005G248500 [exp]	0	1	Ptr4CL14
AT4G35160			O-methyltransferase family pro...		Potri.013G122000 [exp]	1.41	0.9346
AT2G35610		XEG113	xyloglucanase 113 (.1)		Potri.004G235800 [exp]	4.00	0.8874
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145530 [exp]	4.58	0.8958
AT1G79740			hAT transposon superfamily (.1...		Potri.018G135702 [exp]	7.41	0.8548
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145540 [exp]	8.66	0.8474
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Potri.006G115000 [exp]	8.66	0.8801
AT4G00980			zinc knuckle (CCHC-type) famil...		Potri.002G171900 [exp]	9.00	0.8639
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.002G240000 [exp]	10.67	0.8795
AT1G03370			C2 calcium/lipid-binding and G...		Potri.006G003200 [exp]	11.53	0.8706
AT5G47040		LON2	lon protease 2 (.1)		Potri.001G148400 [exp]	15.19	0.8331	LON.1

Compare expression of checked genes

Potri.005G248500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.