Plant FIBer expression Database

Potri.005G248600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G76200 91 / 3e-26 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G012700
[exp]
111 / 2e-34 AT1G76200 91 / 2e-26 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034571
[exp]
108 / 4e-33 AT1G76200 94 / 2e-27 unknown protein
Lus10016001
[exp]
102 / 2e-30 AT1G76200 91 / 2e-26 unknown protein
Lus10012279
[exp]
91 / 2e-24 AT1G76200 79 / 1e-19 unknown protein
PFAM info
Representative CDS sequence
>Potri.005G248600.3 pacid=42804132 polypeptide=Potri.005G248600.3.p locus=Potri.005G248600 ID=Potri.005G248600.3.v4.1 annot-version=v4.1
ATGGCAGGAGGGCATGGAGAGGGCATCAATTACAAAGGCTTGACTATGCATAAGCCAAAGCGATGGCATGTAGTCACTGGAAAGGGCTTGTGTGCTGTCA
TGTGGTTTTGGGTACTTTACAGGGCGAAGCAAGATGGCCCTGTAGTATTGGGCTGGAGACATCCGTGGGAGGGCCATGGTGACCATGGCCATGAGAGTGG
ACACTAG
AA sequence
>Potri.005G248600.3 pacid=42804132 polypeptide=Potri.005G248600.3.p locus=Potri.005G248600 ID=Potri.005G248600.3.v4.1 annot-version=v4.1
MAGGHGEGINYKGLTMHKPKRWHVVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHGDHGHESGH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G76200 unknown protein Potri.005G248600
[exp]
0 1
AT3G03070 NADH-ubiquinone oxidoreductase... Potri.013G082100
[exp]
2.00 0.8896
AT1G67350 unknown protein Potri.003G173000
[exp]
2.82 0.8907
AT1G67250 Proteasome maturation factor U... Potri.017G111900
[exp]
3.46 0.8876
AT5G66140 PAD2 proteasome alpha subunit D2 (.... Potri.009G133800
[exp]
6.16 0.8568 Pt-PAD1.3
AT5G61310 Cytochrome c oxidase subunit V... Potri.014G120500
[exp]
7.34 0.8447
AT5G20500 Glutaredoxin family protein (.... Potri.018G133400
[exp]
8.30 0.8889
AT4G30010 unknown protein Potri.018G142500
[exp]
8.48 0.8850
AT5G47570 unknown protein Potri.001G122200
[exp]
13.74 0.8713
AT4G31300 PBA1 N-terminal nucleophile aminohy... Potri.018G145900
[exp]
15.87 0.8335 Pt-PBA1.1
AT3G04780 Protein of unknown function (D... Potri.013G039500
[exp]
16.27 0.8852

Potri.005G248600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.