Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76210 152 / 1e-45 Arabidopsis protein of unknown function (DUF241) (.1) AT1G20520 124 / 6e-35 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 63 / 1e-11 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 48 / 2e-06 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17080 47 / 2e-06 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 47 / 3e-06 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35660 45 / 2e-05 Arabidopsis protein of unknown function (DUF241) (.1) AT3G51400 44 / 3e-05 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G012600 [exp] 316 / 3e-110 AT1G76210 155 / 5e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249100 [exp] 86 / 1e-19 AT2G17080 149 / 1e-43 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 77 / 1e-16 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 73 / 4e-15 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 72 / 8e-15 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 71 / 3e-14 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103800 [exp] 66 / 1e-12 AT4G35720 165 / 1e-48 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012200 [exp] 64 / 7e-12 AT2G17080 130 / 2e-36 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G248975 [exp] 61 / 4e-11 AT2G17080 164 / 2e-49 Arabidopsis protein of unknown function (DUF241) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012278 [exp] 178 / 1e-55 AT1G76210 162 / 1e-49 Arabidopsis protein of unknown function (DUF241) (.1) Lus10016002 [exp] 176 / 9e-55 AT1G76210 164 / 2e-50 Arabidopsis protein of unknown function (DUF241) (.1) Lus10028381 [exp] 53 / 4e-08 AT4G35690 173 / 1e-52 Arabidopsis protein of unknown function (DUF241) (.1) Lus10028380 [exp] 51 / 2e-07 AT4G35680 129 / 4e-34 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 49 / 1e-06 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10041835 [exp] 47 / 5e-06 AT4G35690 98 / 3e-23 Arabidopsis protein of unknown function (DUF241) (.1) Lus10028382 [exp] 45 / 2e-05 AT4G35690 95 / 2e-22 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025124 [exp] 43 / 0.0001 AT2G17080 217 / 2e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 42 / 0.0001 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023954 [exp] 39 / 0.0003 AT2G17080 52 / 1e-09 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF03087 [poplar] [flax] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.005G248700.1 pacid=42804717 polypeptide=Potri.005G248700.1.p locus=Potri.005G248700 ID=Potri.005G248700.1.v4.1 annot-version=v4.1 ATGGCACTGCCTAATTTCAATGCTCTCAGAGACTTGCATAACTCTGCCAATGATCTTCTCCATTCACCAGAGATCCAACAAGTTCTTGTCAACCAGAAAC AAGAAAAATGGCTTCACGAAGTCTCGGAGTCATCTCTAAGAATGCTGGATGTGTGTGGCATTTCTAAGGATGTTCTTTTGCTTGTCAAAGAACATCTTCT AGACTTACAATTCACATTACGTAGAAAAAGAGTTAGCAAGCCAGATATTAGTACCAAAATTGCAGCCTATAATTTCTACAGAAAGAAGCTAAAGAAAGAG ACAATGAAATGCCTGAAATCACTGAAGGGAATGAAAGGCAAGTCTGTAACTTCAGATATCTCAAATGTAGACCACAGCATTATCGTGGTTGTTGAAGTAC TGAGAGAAGTGAGAGTCACTACCATCACCATTGTTGAATCTTTGTTGTCTCTCATCTCAATTCCATGGCTGGACCAAGGATCAAGTAAAGGGTCTTTTAT AAGGTCAACGTTCTTGCGATCAAGTGGACAGAGTTCGTACGATTTTTGTGACGAAACAGCACTTCATACTGCAGATAAAAGACTGGAGGCAGTGGAGATT GCCGTTGAAGATCTTGAAGTTGAATTAGAGTGCATGTTCAGGCGTTTGATCCAGACAAGGGTTCTGCTCCTTAACATACTTACCAATTAA
AA sequence Show only first row Show all	>Potri.005G248700.1 pacid=42804717 polypeptide=Potri.005G248700.1.p locus=Potri.005G248700 ID=Potri.005G248700.1.v4.1 annot-version=v4.1 MALPNFNALRDLHNSANDLLHSPEIQQVLVNQKQEKWLHEVSESSLRMLDVCGISKDVLLLVKEHLLDLQFTLRRKRVSKPDISTKIAAYNFYRKKLKKE TMKCLKSLKGMKGKSVTSDISNVDHSIIVVVEVLREVRVTTITIVESLLSLISIPWLDQGSSKGSFIRSTFLRSSGQSSYDFCDETALHTADKRLEAVEI AVEDLEVELECMFRRLIQTRVLLLNILTN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76210			Arabidopsis protein of unknown...		Potri.005G248700 [exp]	0	1
AT2G12646			PLATZ transcription factor fam...		Potri.018G116000 [exp]	7.61	0.6628
AT5G01720			RNI-like superfamily protein (...		Potri.019G123400 [exp]	16.49	0.5937
AT1G75717			unknown protein		Potri.005G238400 [exp]	17.74	0.6402
					Potri.006G126750 [exp]	19.44	0.5876
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Potri.005G163300 [exp]	20.24	0.6116
					Potri.002G021150 [exp]	22.75	0.6086
AT4G20880			ethylene-responsive nuclear pr...		Potri.011G162400 [exp]	30.19	0.6278
					Potri.013G012800 [exp]	30.59	0.5312
AT3G14470			NB-ARC domain-containing disea...		Potri.001G025400 [exp]	35.07	0.6089
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Potri.003G081500 [exp]	36.82	0.5994

Compare expression of checked genes

Potri.005G248700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.